View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4163_low_11 (Length: 369)
Name: NF4163_low_11
Description: NF4163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4163_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 8358767 - 8359113
Alignment:
| Q |
1 |
aagaaaataacttgaaacaattttaggtgcagtgaatatcattttcttttctattatcaccaattctatgctacatcatttgaaaattacaaaactgaga |
100 |
Q |
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| T |
8358767 |
aagaaaataacttgaaacaattttagatgcagtgaatatcattttcttttctattatcaccaattctatgctacatcatttgaaaattacaaaactgaga |
8358866 |
T |
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| Q |
101 |
atctctttcgcaaatttatgtattccctgatcatcaatcggggtaaaatacagtgcaacttgtataaatacagtgcgaccattaaatttgattgatcgga |
200 |
Q |
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| T |
8358867 |
atctctttcgcaaatttatgtattccctgatcatcaattggggtaaaatac--------------------agtgcgaccattaaatttgattgatcgga |
8358946 |
T |
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| Q |
201 |
t------------agatgataccttattacaaaatttgtcgtcttgttctatggaaatgttttcaagaagaggagcttgtacgataagatcttttctacc |
288 |
Q |
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| T |
8358947 |
taggcgaaccatgagatgataccttattacaaaatttgtcgtcttgttctatggaaatgttttcaagaagaggagcttgtacgataagatcttttctacc |
8359046 |
T |
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| Q |
289 |
acaccaaatgcagtttttaatatcaannnnnnnnaggagtggtaaacaaaggatcatacactcattg |
355 |
Q |
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| T |
8359047 |
acaccaaatgcagtttttaatatcaattttttttaggagtggtaaacaaaggatcatacactcattg |
8359113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 229 - 314
Target Start/End: Complemental strand, 8317213 - 8317128
Alignment:
| Q |
229 |
gtcttgttctatggaaatgttttcaagaagaggagcttgtacgataagatcttttctaccacaccaaatgcagtttttaatatcaa |
314 |
Q |
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| T |
8317213 |
gtcttgttctatggaaacaatttcaagtagaggagcttctacaataagatcttttccacccgaccaattgcagtttttgatatcaa |
8317128 |
T |
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