View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4163_low_12 (Length: 360)
Name: NF4163_low_12
Description: NF4163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4163_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 7 - 342
Target Start/End: Complemental strand, 35982103 - 35981767
Alignment:
| Q |
7 |
taaataatactgtgtgcagtttttgcataatattggttagagtcttggagatattttctaaatatagcttataaactttcgtcaatcctcgacttacaag |
106 |
Q |
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| T |
35982103 |
taaatagtactgtgtgcagtttttgcataatattggttagagtcttggagatattttctaaatatagcttataaactttcgtcaatcctcgacttacaag |
35982004 |
T |
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| Q |
107 |
ctggtttaaattcgcagcattattgtaacaatcaaatgaaatttttctagctgttataataannnnnnn-aagaaacttctctgtcaccgcagataaatg |
205 |
Q |
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| T |
35982003 |
ctggtttaaattcgcagcattattgtaacaatcaaatgaaaattttctagctgttataataattttttttaagaaacttctgtgtcaccgcagataaatg |
35981904 |
T |
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| Q |
206 |
aaatgaatggattactaactaattcactataggtatgactatgaacattaaattaacagatagcaacatttatctataatcatttagtagcaactcggtt |
305 |
Q |
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| T |
35981903 |
aaatgaatggattactaactaattcactataggtatgactatgaacattaaattaacagatagcaacatttatctataatcatttagtagcaactcggtt |
35981804 |
T |
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| Q |
306 |
gaaaagctttattcctcaactaactctttctttccag |
342 |
Q |
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| T |
35981803 |
gaaaagctttattcctcaactaactctttctttccag |
35981767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 224 - 282
Target Start/End: Complemental strand, 35992363 - 35992305
Alignment:
| Q |
224 |
ctaattcactataggtatgactatgaacattaaattaacagatagcaacatttatctat |
282 |
Q |
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| T |
35992363 |
ctaatttactataggtatggctatgaacattaaattaacaattagcaacatttctctat |
35992305 |
T |
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