View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4163_low_13 (Length: 348)
Name: NF4163_low_13
Description: NF4163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4163_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 47136431 - 47136746
Alignment:
| Q |
18 |
agagtaaagattgttgttacaaacctgcaacgtgcacacagaatctgttgcagcaaatattgcaccaattgctgaaattttatttacaaagtgagtcaca |
117 |
Q |
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| T |
47136431 |
agagtaaagattgttgttacaaacctgcaacgtgcacacagaatctgttgcagcaaatattgcaccaattgctgaaattttatttacaaagtgagtcaca |
47136530 |
T |
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| Q |
118 |
atcagaatttgacagttgacaaatatatcgatgatattgaataatgtacttctgtaattacctacagcctcccctagatcaagcgtaccaatacccattc |
217 |
Q |
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| T |
47136531 |
atcagaatttgacagttgacaaatatatcgatgatattgaataatgtacttcagtaattacctacagcctcccctagatcaagcgtaccaatacccattc |
47136630 |
T |
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| Q |
218 |
tcttaaaaatttgtgatacacctgaaacaatgcttcaaaatattaagtcagatcagaattagacaattacccacaaggataagggatagtttgcttaaag |
317 |
Q |
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| T |
47136631 |
tcttaaaaatttgtgatacacctgaaacaatgcttcaaaatattaagtcagatcagaattagacaattacccacaaggataagggatggtttgcttaaag |
47136730 |
T |
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| Q |
318 |
taaccatctgagtttt |
333 |
Q |
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| T |
47136731 |
taaccatctgagtttt |
47136746 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 49207751 - 49207802
Alignment:
| Q |
40 |
acctgcaacgtgcacacagaatctgttgcagcaaatattgcaccaattgctg |
91 |
Q |
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| T |
49207751 |
acctgcaatgtgcaaacagaatctgttgctgaaaatattgctccaattgctg |
49207802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 36489808 - 36489759
Alignment:
| Q |
37 |
caaacctgcaacgtgcacacagaatctgttgcagcaaatattgcaccaat |
86 |
Q |
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| T |
36489808 |
caaacctgcaatgtgcaaacggaatctgttgcggcaaatattgctccaat |
36489759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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