View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4163_low_16 (Length: 316)
Name: NF4163_low_16
Description: NF4163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4163_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 23967279 - 23966971
Alignment:
| Q |
1 |
tgttccaatcttcaacactgtaactcatgtaccagtgtaataaaagataaatgattttttggacttcataaaagctaagctccctccccgaacggtgctg |
100 |
Q |
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| T |
23967279 |
tgttccaatcttcaacactgtaattcatgtaccagtgtaataaaagataaatgattttttggacttcataaaagctaagctccctccccgaacggtgctg |
23967180 |
T |
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| Q |
101 |
ctgattgctgatgctccgagtacatgttataccattttgaaatcttaacaannnnnnnggcttgttaaaaataaaacagttgatgccatctggaatatca |
200 |
Q |
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| T |
23967179 |
ctgattgctgatgctccgagtacatgttataccattttgaaatcttaacaatttttttggcttgttaaaaataaaacagttgatgccatctggaatatca |
23967080 |
T |
|
| Q |
201 |
gagacatttataagatccccagaatagattggcaaggagacccatgtggaccaactggttttagatgggaaggtctcatttgcggtggtgcgaataatcc |
300 |
Q |
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| T |
23967079 |
gagacatttataagatccccagaatagattggcaaggagacccatgtggaccaactggttttagatgggaaggtctcatttgcggtggtgcgaataatcc |
23966980 |
T |
|
| Q |
301 |
aagaataat |
309 |
Q |
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||||||||| |
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| T |
23966979 |
aagaataat |
23966971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 41 - 309
Target Start/End: Original strand, 23997122 - 23997383
Alignment:
| Q |
41 |
taaaagataaatgattttttggacttcataaaagctaagctccctccccgaacggtgctgctgattgctgatgctccgagtacatgttataccattttga |
140 |
Q |
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| T |
23997122 |
taaaagataaatgatttcttggacttcataaaagctaagctccctccccgaacggtgctgctgat-------gctccgagtacatgttatacaattttga |
23997214 |
T |
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| Q |
141 |
aatcttaacaannnnnnnggcttgttaaaaataaaacagttgatgccatctggaatatcagagacatttataagatccccagaatagattggcaaggaga |
240 |
Q |
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| T |
23997215 |
aatcttaacaaatttttaggcttgttaaaaataaaacagttgatgccatctggtatatcagagacatttacaatatctccagaatagattggcaaggtga |
23997314 |
T |
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| Q |
241 |
cccatgtggaccaactggttttagatgggaaggtctcatttgcggtggtgcgaataatccaagaataat |
309 |
Q |
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||||||||||||||| |||||||||||||||||||||| |||| | |||| |||||||||||||||||| |
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| T |
23997315 |
cccatgtggaccaacaggttttagatgggaaggtctcacttgcagcggtgagaataatccaagaataat |
23997383 |
T |
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