View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4163_low_17 (Length: 314)
Name: NF4163_low_17
Description: NF4163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4163_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 12596016 - 12596313
Alignment:
| Q |
1 |
tataagaaaaagatagtggatggttttgaaattcctttggatttagtagaggggccagctgaaagaattctaaaagcagtagagaatttcaccacaagag |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12596016 |
tataggaaaaagatagtggatggttttgaaattcctttggatttagtagaggggccagctgaaagaattctaaaagcagtagagaatttcaccacaagag |
12596115 |
T |
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| Q |
101 |
atgtgcgtctacttgacatccttggagttgactttatatatgaagtggagggattgaatgcgcatgagtcccttaagctcttcagttatcatacttttag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
12596116 |
atgtgcgtctacttgacatccttggagttgactttatatatgaagtggagggtttgaatgcgcatgagtcccttaagctcttcagttttcatgcttttag |
12596215 |
T |
|
| Q |
201 |
ggaggcatggctaacaaaagacttcgcaattctctcaagagatgtagttgcctactgcgatggactaccactagctcttgaaatccttgggtcttact |
298 |
Q |
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| T |
12596216 |
ggaggcaaggtcaacaaaagacttcgcaattctctcaagagatgtagttgcctactgcgatggactaccactagctcttgaagtccttgggtcttact |
12596313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 92
Target Start/End: Original strand, 12243017 - 12243103
Alignment:
| Q |
6 |
gaaaaagatagtggatggttttgaaattcctttggatttagtagaggggccagctgaaagaattctaaaagcagtagagaatttcac |
92 |
Q |
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| T |
12243017 |
gaaaaggagagtggatggttttgagattcccttggatttagtaggggagccagctgaaagaattctaaaatcagtagagaacttcac |
12243103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 160
Target Start/End: Original strand, 15801356 - 15801427
Alignment:
| Q |
89 |
tcaccacaagagatgtgcgtctacttgacatccttggagttgactttatatatgaagtggagggattgaatg |
160 |
Q |
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| T |
15801356 |
tcacaacaagagatgcacgtctacttgacatccttggagttgattttatttatgaagcggagggattgaatg |
15801427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 298
Target Start/End: Original strand, 15801506 - 15801565
Alignment:
| Q |
239 |
gagatgtagttgcctactgcgatggactaccactagctcttgaaatccttgggtcttact |
298 |
Q |
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||||||||||| |||| || | |||||||||||||||||||||| ||||||| ||||||| |
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| T |
15801506 |
gagatgtagtttcctattgtggtggactaccactagctcttgaagtccttggatcttact |
15801565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 89 - 298
Target Start/End: Original strand, 3313222 - 3313431
Alignment:
| Q |
89 |
tcaccacaagagatgtgcgtctacttgacatccttggagttgactttatatatgaagtggagggattgaatgcgcatgagtcccttaagctcttcagtta |
188 |
Q |
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|||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||| || |||||||||| |||| |||||| | |
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| T |
3313222 |
tcacaacaagagatgtacgtctacttgatatccttggagttgactttatatatgaagcggagggattgaattcggttgagtcccttgagcttttcagtca |
3313321 |
T |
|
| Q |
189 |
tcatacttttagggaggcatggctaacaaaagacttcgcaattctctcaagagatgtagttgcctactgcgatggactaccactagctcttgaaatcctt |
288 |
Q |
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||| | ||||||||| || | | || | ||| ||| ||||| |||||| ||||||||||||| || | |||||| ||||||||||||||| ||||| |
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| T |
3313322 |
gcatgcgtttagggagacaagtccaatagaaggtttccttattctttcaagatatgtagttgcctattgtggtggactgccactagctcttgaagtcctt |
3313421 |
T |
|
| Q |
289 |
gggtcttact |
298 |
Q |
| |
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|| ||||||| |
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| T |
3313422 |
ggatcttact |
3313431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 97 - 298
Target Start/End: Original strand, 3362600 - 3362801
Alignment:
| Q |
97 |
agagatgtgcgtctacttgacatccttggagttgactttatatatgaagtggagggattgaatgcgcatgagtcccttaagctcttcagttatcatactt |
196 |
Q |
| |
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|||||| ||||| ||||| | ||||||| |||||| ||||| ||||||| |||| ||||||||| |||||||||| |||| ||| || | ||| ||| |
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| T |
3362600 |
agagatctgcgtgtacttaatatccttgaagttgattttatctatgaagcagaggaattgaatgctagtgagtcccttgagcttttctgtaaacatgctt |
3362699 |
T |
|
| Q |
197 |
ttagggaggcatggctaacaaaagacttcgcaattctctcaagagatgtagttgcctactgcgatggactaccactagctcttgaaatccttgggtctta |
296 |
Q |
| |
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|| || |||| | |||| |||||||| |||||||||||||||||||||||||| || | |||| ||||||||||||||||| ||||||| ||||| |
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| T |
3362700 |
ttcggaaggcgattccaacacaagacttccttattctctcaagagatgtagttgcctattgtggtggaataccactagctcttgaagtccttggatctta |
3362799 |
T |
|
| Q |
297 |
ct |
298 |
Q |
| |
|
|| |
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| T |
3362800 |
ct |
3362801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 97 - 298
Target Start/End: Complemental strand, 3393283 - 3393082
Alignment:
| Q |
97 |
agagatgtgcgtctacttgacatccttggagttgactttatatatgaagtggagggattgaatgcgcatgagtcccttaagctcttcagttatcatactt |
196 |
Q |
| |
|
|||||| ||||| ||||| | ||||||| |||||| ||||| ||||||| |||||||||||||| ||||||||| |||| ||| || ||| ||| |
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| T |
3393283 |
agagatctgcgtgtacttaatatccttgaagttgattttatctatgaagcagagggattgaatgctagcgagtcccttgagcttttctgtggacatgctt |
3393184 |
T |
|
| Q |
197 |
ttagggaggcatggctaacaaaagacttcgcaattctctcaagagatgtagttgcctactgcgatggactaccactagctcttgaaatccttgggtctta |
296 |
Q |
| |
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||||| ||| | | |||| |||||||| |||||||||||| ||||||||||||| || | |||| ||||||||||||||||| ||||||| ||||| |
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| T |
3393183 |
ttaggaaggtaattccaacagaagacttccttattctctcaagatatgtagttgcctattgtggtggaataccactagctcttgaagtccttggatctta |
3393084 |
T |
|
| Q |
297 |
ct |
298 |
Q |
| |
|
|| |
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|
| T |
3393083 |
ct |
3393082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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