View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4163_low_18 (Length: 304)

Name: NF4163_low_18
Description: NF4163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4163_low_18
NF4163_low_18
[»] scaffold1744 (1 HSPs)
scaffold1744 (19-285)||(974-1240)
[»] chr6 (5 HSPs)
chr6 (143-217)||(14858705-14858780)
chr6 (143-217)||(14860728-14860803)
chr6 (144-217)||(18675954-18676028)
chr6 (179-209)||(24172951-24172981)
chr6 (180-216)||(12351545-12351581)
[»] scaffold0303 (1 HSPs)
scaffold0303 (180-229)||(20521-20572)
[»] chr7 (2 HSPs)
chr7 (184-216)||(8595450-8595482)
chr7 (179-217)||(18069964-18070002)
[»] chr5 (1 HSPs)
chr5 (180-216)||(14405406-14405442)
[»] chr3 (2 HSPs)
chr3 (180-229)||(5027733-5027784)
chr3 (180-216)||(39924893-39924929)
[»] scaffold0097 (1 HSPs)
scaffold0097 (182-229)||(31952-32001)
[»] chr2 (2 HSPs)
chr2 (182-229)||(20728123-20728172)
chr2 (180-234)||(24779549-24779605)
[»] scaffold0882 (1 HSPs)
scaffold0882 (180-217)||(1082-1119)
[»] scaffold0766 (1 HSPs)
scaffold0766 (180-217)||(2284-2321)
[»] scaffold0031 (2 HSPs)
scaffold0031 (108-168)||(89877-89939)
scaffold0031 (180-217)||(89954-89991)
[»] chr8 (1 HSPs)
chr8 (180-216)||(37785822-37785858)


Alignment Details
Target: scaffold1744 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold1744
Description:

Target: scaffold1744; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 974 - 1240
Alignment:
Q  19 atatacaatgaaataatcgatatggccaggataagaataacactagcaattgttaatgcatgctaaacattatttttatgttaaaagatttatgcagttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  974 atatacaatgaaataatcgatatggccaggataagaataacactagcaattgttaatgcatgctaaacattatttttatgttaaaagatttatgcagttt 1073  T
Q  119 tcaaaataaattatatttcatgcaaaaaatattttcatgtaaaatcactttagnnnnnnntattgtgagtgtgtgatttattttaatgagagctttttac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |       ||||||||||||||||||||||||||||||||||||||||    
T  1074 tcaaaataaattatatttcatgcaaaaaatattttcatgtaaaatcactttcgaaaaagatattgtgagtgtgtgatttattttaatgagagctttttac 1173  T
Q  219 tatttacataaggttcctagaaagaaatattcttctagtccatagcttgaataatttagatcccttt 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1174 tatttacataaggttcctagaaagaaatattcttctagtccatagcttgaataatttagatcccttt 1240  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 14858780 - 14858705
Alignment:
Q  143 aaaaatattttcatgtaaaatcactttagnnnnnnnt-attgtgagtgtgtgatttattttaatgagagcttttta 217  Q
    ||||||||||||||||||||| |||||||       | ||||||||||||||||||||||| ||||||||||||||    
T  14858780 aaaaatattttcatgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttcatgagagcttttta 14858705  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 14860803 - 14860728
Alignment:
Q  143 aaaaatattttcatgtaaaatcactttagnnnnnnnt-attgtgagtgtgtgatttattttaatgagagcttttta 217  Q
    ||||||||||||||||||||| |||||||       | ||||||||||||||||||||||| ||||||||||||||    
T  14860803 aaaaatattttcatgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttcatgagagcttttta 14860728  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 217
Target Start/End: Complemental strand, 18676028 - 18675954
Alignment:
Q  144 aaaatattttcatgtaaaatcactttagnnnnnnnt-attgtgagtgtgtgatttattttaatgagagcttttta 217  Q
    |||||||||||||||||||| |||||||       | ||||||||||||||||||||||| ||||||||||||||    
T  18676028 aaaatattttcatgtaaaattactttagatgaaaatcattgtgagtgtgtgatttattttcatgagagcttttta 18675954  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 209
Target Start/End: Complemental strand, 24172981 - 24172951
Alignment:
Q  179 tattgtgagtgtgtgatttattttaatgaga 209  Q
    |||||||||||||||||||||||||||||||    
T  24172981 tattgtgagtgtgtgatttattttaatgaga 24172951  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 12351581 - 12351545
Alignment:
Q  180 attgtgagtgtgtgatttattttaatgagagcttttt 216  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  12351581 attgtgaatgtgtgatttattttcatgagagcttttt 12351545  T

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Target: scaffold0303 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 20572 - 20521
Alignment:
Q  180 attgtgagtgtgtgatttattttaatgagagctttt--tactatttacataa 229  Q
    ||||||||||||||||||||||| ||||||||||||  ||||| ||||||||    
T  20572 attgtgagtgtgtgatttattttcatgagagcttttggtactacttacataa 20521  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 216
Target Start/End: Original strand, 8595450 - 8595482
Alignment:
Q  184 tgagtgtgtgatttattttaatgagagcttttt 216  Q
    |||||||||||||||||||||||||||||||||    
T  8595450 tgagtgtgtgatttattttaatgagagcttttt 8595482  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 217
Target Start/End: Original strand, 18069964 - 18070002
Alignment:
Q  179 tattgtgagtgtgtgatttattttaatgagagcttttta 217  Q
    |||||||||| ||||||||||||| ||||||||||||||    
T  18069964 tattgtgagtatgtgatttattttcatgagagcttttta 18070002  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 14405406 - 14405442
Alignment:
Q  180 attgtgagtgtgtgatttattttaatgagagcttttt 216  Q
    |||||||||||||||||||||||||||||| ||||||    
T  14405406 attgtgagtgtgtgatttattttaatgagaacttttt 14405442  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 5027733 - 5027784
Alignment:
Q  180 attgtgagtgtgtgatttattttaatgagagctttt--tactatttacataa 229  Q
    ||||||||||||||||||||||| ||||||||||||  ||||| ||||||||    
T  5027733 attgtgagtgtgtgatttattttcatgagagcttttggtactacttacataa 5027784  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 39924929 - 39924893
Alignment:
Q  180 attgtgagtgtgtgatttattttaatgagagcttttt 216  Q
    |||||||||||||||||||||||||||||| ||||||    
T  39924929 attgtgagtgtgtgatttattttaatgagaacttttt 39924893  T

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Target: scaffold0097 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 31952 - 32001
Alignment:
Q  182 tgtgagtgtgtgatttattttaatgagagctttt--tactatttacataa 229  Q
    |||||||||||||| |||||| ||||||||||||  ||||||||||||||    
T  31952 tgtgagtgtgtgatgtattttcatgagagctttttctactatttacataa 32001  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 20728123 - 20728172
Alignment:
Q  182 tgtgagtgtgtgatttattttaatgagagctttt--tactatttacataa 229  Q
    |||||||||||||| |||||| ||||||||||||  ||||||||||||||    
T  20728123 tgtgagtgtgtgatgtattttcatgagagctttttctactatttacataa 20728172  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 24779605 - 24779549
Alignment:
Q  180 attgtgagtgtgtgatttattttaatgagagctttt--tactatttacataaggttc 234  Q
    |||| |||||||||||||||||| ||||||||||||  ||||| |||||||| ||||    
T  24779605 attgcgagtgtgtgatttattttcatgagagcttttcctactacttacataaagttc 24779549  T

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Target: scaffold0882 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0882
Description:

Target: scaffold0882; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 1082 - 1119
Alignment:
Q  180 attgtgagtgtgtgatttattttaatgagagcttttta 217  Q
    |||||||||||||||||||||||  |||||||||||||    
T  1082 attgtgagtgtgtgatttatttttttgagagcttttta 1119  T

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Target: scaffold0766 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 2321 - 2284
Alignment:
Q  180 attgtgagtgtgtgatttattttaatgagagcttttta 217  Q
    |||||||||||||||||||||||  |||||||||||||    
T  2321 attgtgagtgtgtgatttatttttttgagagcttttta 2284  T

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Target: scaffold0031 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 89877 - 89939
Alignment:
Q  108 ttatgcagttttcaaaataaattata---tttcatgcaaaaaatattttcatgtaaaatcactt 168  Q
    ||||||||||||  |||||||||||    |||||||||||| ||||||||||||||||||||||    
T  89877 ttatgcagttttggaaataaattatgacctttcatgcaaaa-atattttcatgtaaaatcactt 89939  T

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Target: scaffold0031; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 89954 - 89991
Alignment:
Q  180 attgtgagtgtgtgatttattttaatgagagcttttta 217  Q
    |||||||||||||||||||||||  |||||||||||||    
T  89954 attgtgagtgtgtgatttattttcttgagagcttttta 89991  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 37785858 - 37785822
Alignment:
Q  180 attgtgagtgtgtgatttattttaatgagagcttttt 216  Q
    |||||| |||||||||||||||||||||||| |||||    
T  37785858 attgtgggtgtgtgatttattttaatgagagtttttt 37785822  T

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