View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4163_low_19 (Length: 303)

Name: NF4163_low_19
Description: NF4163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4163_low_19
NF4163_low_19
[»] chr5 (3 HSPs)
chr5 (1-287)||(23967523-23967809)
chr5 (1-148)||(23996657-23996801)
chr5 (167-287)||(23996545-23996664)
[»] chr4 (4 HSPs)
chr4 (41-157)||(34113617-34113733)
chr4 (31-76)||(50891269-50891314)
chr4 (121-161)||(53628512-53628552)
chr4 (31-75)||(56127424-56127468)
[»] chr1 (1 HSPs)
chr1 (31-154)||(42713735-42713858)
[»] chr2 (2 HSPs)
chr2 (35-161)||(4522304-4522430)
chr2 (31-76)||(1940446-1940491)
[»] chr7 (2 HSPs)
chr7 (32-69)||(3282667-3282704)
chr7 (31-76)||(22608787-22608832)
[»] chr6 (1 HSPs)
chr6 (104-144)||(12329676-12329716)


Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 287
Target Start/End: Original strand, 23967523 - 23967809
Alignment:
Q  1 agcagagaagtaaaatagtcttgcaccatgtgtttttcaccattggatcaataggtctcatcatatctcatttgatatcatagtgagatttattagtcta 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23967523 agcagaaaagtaaaatagtcttgcaccatgtgtttttcaccattggatcaataggtctcatcatatctcatttgatatcatagtgagatttattagtcta 23967622  T
Q  101 attataaaaaataacttatacatgatgcaagacttatcttatttgtacaccatagaattggcctcgatttgtatgaaaatgtgaggatcctttactcata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23967623 attataaaaaataacttatacatgatgcaagacttatcttatttgtacaccatagaattggcctcgatttgtatgaaaatgtgaggatcctttactcata 23967722  T
Q  201 ataggagaaacttaccatcgtcttgttgcgtggctgaaacggtctcaggtattacccagtaaatctcaaaggcattgagcatagcag 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23967723 ataggagaaacttaccatcgtcttgttgcgtggctgaaacggtctcaggtattacccagtaaatctcaaaggcattgagcatagcag 23967809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 23996801 - 23996657
Alignment:
Q  1 agcagagaagtaaaatagtcttgcaccatgtgtttttcaccattggatcaataggtctcatcatatctcatttgatatcatagtgagatttattagtcta 100  Q
    |||||| ||||||||||||||||| |||||||||||| ||||||||||||||| |||||||   ||| |||| ||| | |||||||||||||||| ||||    
T  23996801 agcagaaaagtaaaatagtcttgccccatgtgttttttaccattggatcaataagtctcat---atcacattcgatctaatagtgagatttattaatcta 23996705  T
Q  101 attataaaaaataacttatacatgatgcaagacttatcttatttgtac 148  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  23996704 attataaaaaataacttatacatgatgcaagatttatcttatttgtac 23996657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 167 - 287
Target Start/End: Complemental strand, 23996664 - 23996545
Alignment:
Q  167 atttgtatgaaaatgtgaggatcctttactcataataggagaaacttaccatcgtcttgttgcgtggctgaaacggtctcaggtattacccagtaaatct 266  Q
    ||||||| |||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||| | ||||||    
T  23996664 atttgtacgaaaatgtgaggatcctt-agtcataataggagaaacttaccatcggcttgttgcgtggctaaaaaggtctcaggtattaccctgaaaatct 23996566  T
Q  267 caaaggcattgagcatagcag 287  Q
    |||||||||||||||| ||||    
T  23996565 caaaggcattgagcatggcag 23996545  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 157
Target Start/End: Complemental strand, 34113733 - 34113617
Alignment:
Q  41 cattggatcaataggtctcatcatatctcatttgatatcatagtgagatttattagtctaattataaaaaataacttatacatgatgcaagacttatctt 140  Q
    |||| |||||||| ||| |||||||| |||||| || | |||||||||||||||  |  ||| ||||||| ||||||||||||||||||| |||| |||     
T  34113733 catttgatcaataagtcacatcatatatcatttaatttaatagtgagatttattgattcaatgataaaaactaacttatacatgatgcaacacttgtctc 34113634  T
Q  141 atttgtacaccatagaa 157  Q
    |||| ||||| ||||||    
T  34113633 atttatacacaatagaa 34113617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 50891314 - 50891269
Alignment:
Q  31 tgtttttcaccattggatcaataggtctcatcatatctcatttgat 76  Q
    ||||||||||||||||||||| |  |||||||||||||||||||||    
T  50891314 tgtttttcaccattggatcaaaaaatctcatcatatctcatttgat 50891269  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 53628552 - 53628512
Alignment:
Q  121 catgatgcaagacttatcttatttgtacaccatagaattgg 161  Q
    ||||||| |||||||||||||||| | ||||||||||||||    
T  53628552 catgatgtaagacttatcttatttatgcaccatagaattgg 53628512  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 75
Target Start/End: Complemental strand, 56127468 - 56127424
Alignment:
Q  31 tgtttttcaccattggatcaataggtctcatcatatctcatttga 75  Q
    |||||||| ||| |||||||||| ||||||||||||||| |||||    
T  56127468 tgtttttcgccactggatcaataagtctcatcatatctcctttga 56127424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 154
Target Start/End: Original strand, 42713735 - 42713858
Alignment:
Q  31 tgtttttcaccattggatcaataggtctcatcatatctcatttgatatcatagtgagatttattagtctaattataaaaaataacttatacatgatgcaa 130  Q
    ||||||||||||||| ||||||| || |||| ||||||||||||||    |  || ||||||||  || |||| |  |||||||||| | ||||||||||    
T  42713735 tgtttttcaccattgaatcaataagtatcatgatatctcatttgatccactgatgcgatttattgatcgaattgtggaaaataacttgtgcatgatgcaa 42713834  T
Q  131 gacttatcttatttgtacaccata 154  Q
     |||||||| |||||| |||||||    
T  42713835 aacttatctcatttgtgcaccata 42713858  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 161
Target Start/End: Original strand, 4522304 - 4522430
Alignment:
Q  35 tttcaccattggatcaataggtctcatcatatctcatttgatatcatagtgagatttattagtctaattataaaaaataacttatacatgatgcaagact 134  Q
    ||||||||||| ||||||| ||| |||||||||||||||||| |  | |||||  |||||  || | | ||  ||| ||| || | ||||||||||||||    
T  4522304 tttcaccattgaatcaataagtcccatcatatctcatttgatctactggtgaggcttattgatccagtgatggaaactaatttgtgcatgatgcaagact 4522403  T
Q  135 tatcttatttgtacaccatagaattgg 161  Q
    ||||||| || | ||||||||||||||    
T  4522404 tatcttacttttgcaccatagaattgg 4522430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 1940491 - 1940446
Alignment:
Q  31 tgtttttcaccattggatcaataggtctcatcatatctcatttgat 76  Q
    ||||||||| ||||||||||||| |||||| ||||||||| |||||    
T  1940491 tgtttttcatcattggatcaataagtctcaccatatctcacttgat 1940446  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 3282667 - 3282704
Alignment:
Q  32 gtttttcaccattggatcaataggtctcatcatatctc 69  Q
    |||||||||||||||||||||| || ||||||||||||    
T  3282667 gtttttcaccattggatcaataagtatcatcatatctc 3282704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 22608832 - 22608787
Alignment:
Q  31 tgtttttcaccattggatcaataggtctcatcatatctcatttgat 76  Q
    ||||||||||||||| ||||||| |||||||||||| || ||||||    
T  22608832 tgtttttcaccattgtatcaatatgtctcatcatatatcgtttgat 22608787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 12329716 - 12329676
Alignment:
Q  104 ataaaaaataacttatacatgatgcaagacttatcttattt 144  Q
    ||||||||||  ||||||||||||||||| |||||||||||    
T  12329716 ataaaaaatatgttatacatgatgcaagatttatcttattt 12329676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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