View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4163_low_2 (Length: 558)

Name: NF4163_low_2
Description: NF4163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4163_low_2
NF4163_low_2
[»] chr1 (3 HSPs)
chr1 (15-558)||(4668945-4669485)
chr1 (145-327)||(2790867-2791049)
chr1 (148-327)||(14471852-14472031)
[»] chr3 (2 HSPs)
chr3 (148-327)||(5378323-5378502)
chr3 (145-255)||(13719447-13719557)
[»] chr8 (1 HSPs)
chr8 (145-327)||(91405-91587)
[»] chr6 (2 HSPs)
chr6 (145-327)||(16772758-16772940)
chr6 (145-327)||(32707830-32708012)
[»] chr5 (1 HSPs)
chr5 (145-327)||(12842552-12842734)
[»] chr7 (1 HSPs)
chr7 (145-327)||(11716208-11716390)
[»] scaffold0015 (1 HSPs)
scaffold0015 (145-327)||(24503-24685)
[»] chr4 (1 HSPs)
chr4 (145-327)||(14026632-14026814)


Alignment Details
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 15 - 558
Target Start/End: Original strand, 4668945 - 4669485
Alignment:
Q  15 aataattaatgcatcaatggaagcgtgatcttgtaataaaaatgaattcgtttaaatgtagtggcttagagttgataacatagtggtgcaatggagaaac 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4668945 aataattaatgcatcaatggaagcgtgatcttgtaataaaaatgaattcgtttaaatgtagtggcttagagttgataacatagtggtgcaatggagaaac 4669044  T
Q  115 aaatgaaaagggtcatgattaatcgtgatatgtatcattctctccggtttgaatagaactcaccctcgaatataaatctagttcatcatccctatatgat 214  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4669045 aaatgaaaagggtcatgattaatcttgatatgtatcatcctctccggtttgaatagaactcaccctcgaatataaatctagttcatcatccctatatgat 4669144  T
Q  215 gaaatatcgacaacattgaaggctgctgagacatcataggtattcgacatttatgccttgtaagcattattaatgattttctgcactattttgaaggggc 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |    
T  4669145 gaaatatcgacaacattgaaggctgctgagacatcataggtattcgacatttatgccttgtaagcattgttaatgattttctgcactattttgaagggcc 4669244  T
Q  315 catcaactcttggataaaacctgaaacttggttgatttggataccgnnnnnnncttcttccatagatgcatccatgctaaattttcaattttaaagattt 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  4669245 catcaactcttggataaaacctgaaacttggttgatttggataccgtttttttcttcttccatagatgcatccatgctaaattttcaattttaaagattt 4669344  T
Q  415 gttgccttatcatgtgcttgtcacaattactcataaatctttgaattaggtttctaaaaatcatgtcaacaacttcggttagtccatctatatgaggatg 514  Q
     |||||||   ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4669345 attgcctt---atgtgcttgtcacaattactcataaatctttgaattaggtttccaaaaatcatgtcaacaacttcggttagtccatctatatgaggatg 4669441  T
Q  515 cctaacactgttgacttgaagcttagtactttcctatattaatc 558  Q
    ||||||||| ||||||||||||||||||||||||||||||||||    
T  4669442 cctaacactattgacttgaagcttagtactttcctatattaatc 4669485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 145 - 327
Target Start/End: Original strand, 2790867 - 2791049
Alignment:
Q  145 tgtatcattctctccggtttgaatagaactcaccctcgaatataaatctagttcatcatccctatatgatgaaatatcgacaacattgaaggctgctgag 244  Q
    |||||||| |||||||| ||||| ||||||| ||||||| |  | |||| |||| ||||||  ||||| ||||| |||| |||||||||||| |||||||    
T  2790867 tgtatcatcctctccgggttgaacagaactcgccctcgagttcatatctggttcgtcatccagatatggtgaaagatcggcaacattgaaggttgctgag 2790966  T
Q  245 acatcataggtattcgacatttatgccttgtaagcattattaatgattttctgcactattttgaaggggccatcaactcttgg 327  Q
    ||| |||||||    | || || | ||||||||||||| | | ||||||| || |||||||||||||| |||||| |||||||    
T  2790967 acaccataggttcctggcaattctaccttgtaagcattgtcattgattttttgaactattttgaagggaccatcagctcttgg 2791049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 148 - 327
Target Start/End: Original strand, 14471852 - 14472031
Alignment:
Q  148 atcattctctccggtttgaatagaactcaccctcgaatataaatctagttcatcatccctatatgatgaaatatcgacaacattgaaggctgctgagaca 247  Q
    ||||||||| |||| |||| ||||||||  |||||| | || ||||||||||||||||  ||||| || ||  ||| |||||||||||| ||||||||||    
T  14471852 atcattctccccgggttgagtagaactcgtcctcgagtttatatctagttcatcatccagatatggtgtaaggtcggcaacattgaaggttgctgagaca 14471951  T
Q  248 tcataggtattcgacatttatgccttgtaagcattattaatgattttctgcactattttgaaggggccatcaactcttgg 327  Q
     |||||||    | || || | ||||||||||||| | | |||||||||| ||||| |||||||| |||||| |||||||    
T  14471952 ccataggttcctggcaattctaccttgtaagcattgtcattgattttctgtactatcttgaagggaccatcagctcttgg 14472031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 148 - 327
Target Start/End: Original strand, 5378323 - 5378502
Alignment:
Q  148 atcattctctccggtttgaatagaactcaccctcgaatataaatctagttcatcatccctatatgatgaaatatcgacaacattgaaggctgctgagaca 247  Q
    ||||||||| || | |||| ||||||||  |||||| | || ||||||||||||||||  ||||| |||||  ||| |||||||||||| ||||||||||    
T  5378323 atcattctcccccggttgagtagaactcgtcctcgagtttatatctagttcatcatccagatatggtgaaaggtcggcaacattgaaggttgctgagaca 5378422  T
Q  248 tcataggtattcgacatttatgccttgtaagcattattaatgattttctgcactattttgaaggggccatcaactcttgg 327  Q
     |||||||    | || || | ||||||||||||| |   ||||||| || |||||||||||||| |||||| |||||||    
T  5378423 ccataggttcctggcaattctaccttgtaagcattgtcgttgattttttgaactattttgaagggaccatcagctcttgg 5378502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 145 - 255
Target Start/End: Original strand, 13719447 - 13719557
Alignment:
Q  145 tgtatcattctctccggtttgaatagaactcaccctcgaatataaatctagttcatcatccctatatgatgaaatatcgacaacattgaaggctgctgag 244  Q
    |||||| | |||||||| ||||| ||||||  ||||||| |  | |||| |||| ||||||  ||||| ||||| ||||||||||||||||| |||||||    
T  13719447 tgtatcttcctctccgggttgaacagaacttgccctcgagttcatatctggttcgtcatccagatatggtgaaagatcgacaacattgaaggttgctgag 13719546  T
Q  245 acatcataggt 255  Q
    ||| |||||||    
T  13719547 acaccataggt 13719557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 145 - 327
Target Start/End: Complemental strand, 91587 - 91405
Alignment:
Q  145 tgtatcattctctccggtttgaatagaactcaccctcgaatataaatctagttcatcatccctatatgatgaaatatcgacaacattgaaggctgctgag 244  Q
    |||||||| ||| |||| ||||| ||||||| ||||||| |  | |||| |||| ||||||  ||||| ||||| |||| |||||||||||| |||||||    
T  91587 tgtatcatcctccccggattgaacagaactcgccctcgagttcatatctggttcgtcatccagatatggtgaaagatcggcaacattgaaggttgctgag 91488  T
Q  245 acatcataggtattcgacatttatgccttgtaagcattattaatgattttctgcactattttgaaggggccatcaactcttgg 327  Q
    ||| |||||||    | || || | ||||||||||||| |   ||||||| || |||||||||||||| |||||| |||||||    
T  91487 acaccataggttcctggcaattctaccttgtaagcattgtcgttgattttttgaactattttgaagggaccatcagctcttgg 91405  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 145 - 327
Target Start/End: Original strand, 16772758 - 16772940
Alignment:
Q  145 tgtatcattctctccggtttgaatagaactcaccctcgaatataaatctagttcatcatccctatatgatgaaatatcgacaacattgaaggctgctgag 244  Q
    |||||||| ||| || | ||||| ||||||| ||||||| |  | |||| |||||||||||  ||||| ||||| |||| |||||||||||| |||||||    
T  16772758 tgtatcatcctccccaggttgaacagaactcgccctcgagttcatatctggttcatcatccagatatggtgaaagatcggcaacattgaaggttgctgag 16772857  T
Q  245 acatcataggtattcgacatttatgccttgtaagcattattaatgattttctgcactattttgaaggggccatcaactcttgg 327  Q
    ||| |||||||    | || || | ||||||||||||| |   ||||||| || |||||||||||||| |||||| |||||||    
T  16772858 acaccataggttcctggcaattctaccttgtaagcattgtcgttgattttttgaactattttgaagggaccatcagctcttgg 16772940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 145 - 327
Target Start/End: Complemental strand, 32708012 - 32707830
Alignment:
Q  145 tgtatcattctctccggtttgaatagaactcaccctcgaatataaatctagttcatcatccctatatgatgaaatatcgacaacattgaaggctgctgag 244  Q
    |||||||| ||| |||| ||||| ||||||| ||||||| |  | |||| |||| ||||||  ||||| ||||| |||| |||||||||||| |||||||    
T  32708012 tgtatcatcctccccgggttgaacagaactcgccctcgagttcatatctggttcgtcatccagatatggtgaaagatcggcaacattgaaggttgctgag 32707913  T
Q  245 acatcataggtattcgacatttatgccttgtaagcattattaatgattttctgcactattttgaaggggccatcaactcttgg 327  Q
    ||| |||||||    | || || | ||||||||||||| |   ||||||| || |||||||||||||| |||||| |||||||    
T  32707912 acaccataggttcctggcaattctaccttgtaagcattgtcgttgattttttgaactattttgaagggaccatcagctcttgg 32707830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 145 - 327
Target Start/End: Complemental strand, 12842734 - 12842552
Alignment:
Q  145 tgtatcattctctccggtttgaatagaactcaccctcgaatataaatctagttcatcatccctatatgatgaaatatcgacaacattgaaggctgctgag 244  Q
    |||||||| ||| |||| ||||| ||||||| ||||||| |  | |||| |||| ||||||  ||||| ||||| |||| |||||||||||| |||||||    
T  12842734 tgtatcatcctccccgggttgaacagaactcgccctcgagttcatatctggttcgtcatccagatatggtgaaagatcggcaacattgaaggttgctgag 12842635  T
Q  245 acatcataggtattcgacatttatgccttgtaagcattattaatgattttctgcactattttgaaggggccatcaactcttgg 327  Q
    ||| |||||||    | || || | ||||||||||||| |   ||||||| || |||||||||||||| |||||| |||||||    
T  12842634 acaccataggttcctggcaattctaccttgtaagcattgtcgttgattttttgaactattttgaagggaccatcagctcttgg 12842552  T

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Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 145 - 327
Target Start/End: Complemental strand, 11716390 - 11716208
Alignment:
Q  145 tgtatcattctctccggtttgaatagaactcaccctcgaatataaatctagttcatcatccctatatgatgaaatatcgacaacattgaaggctgctgag 244  Q
    |||||||| ||| | || ||||| ||||||| ||||||| |  | |||| |||| ||||||  ||||| ||||| |||| |||||||||||| |||||||    
T  11716390 tgtatcatcctccctgggttgaacagaactcgccctcgagttcatatctggttcgtcatccagatatggtgaaagatcggcaacattgaaggttgctgag 11716291  T
Q  245 acatcataggtattcga-catttatgccttgtaagcattattaatgattttctgcactattttgaaggggccatcaactcttgg 327  Q
    ||| ||||||| | | | || || | ||||||||||||| | | ||||||| || |||||||||||||| |||||| |||||||    
T  11716290 acaccataggt-tcctagcaattctaccttgtaagcattgtcattgattttttgaactattttgaagggaccatcagctcttgg 11716208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 145 - 327
Target Start/End: Original strand, 24503 - 24685
Alignment:
Q  145 tgtatcattctctccggtttgaatagaactcaccctcgaatataaatctagttcatcatccctatatgatgaaatatcgacaacattgaaggctgctgag 244  Q
    |||||||| ||| | || ||||| ||||||| ||||||| |  | |||| |||| ||||||  ||||| ||||| |||| |||||||||||| |||||||    
T  24503 tgtatcatcctccctgggttgaacagaactcgccctcgagttcatatctggttcgtcatccagatatggtgaaagatcggcaacattgaaggttgctgag 24602  T
Q  245 acatcataggtattcgacatttatgccttgtaagcattattaatgattttctgcactattttgaaggggccatcaactcttgg 327  Q
    ||| |||||||    |  | || | ||||||||||||| |   ||||||| || |||||||||||||| |||||| |||||||    
T  24603 acaccataggttcctggaaattctaccttgtaagcattgtcgttgattttttgaactattttgaagggaccatcagctcttgg 24685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 327
Target Start/End: Complemental strand, 14026814 - 14026632
Alignment:
Q  145 tgtatcattctctccggtttgaatagaactcaccctcgaatataaatctagttcatcatccctatatgatgaaatatcgacaacattgaaggctgctgag 244  Q
    |||||||| ||| |||| ||||| | ||||| ||||||| |  | || | |||| ||||||  ||||| ||||| |||| |||||||||||| |||||||    
T  14026814 tgtatcatcctccccgggttgaacaaaactcgccctcgagttcatatatggttcgtcatccagatatggtgaaagatcggcaacattgaaggttgctgag 14026715  T
Q  245 acatcataggtattcgacatttatgccttgtaagcattattaatgattttctgcactattttgaaggggccatcaactcttgg 327  Q
    ||| |||||||    |  | || | ||||||||||||| | | ||||||| || |||||||||| ||| |||||| |||||||    
T  14026714 acaccataggttcctggaaattctaccttgtaagcattgtcattgattttttgaactattttgaggggaccatcagctcttgg 14026632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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