View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4163_low_21 (Length: 277)
Name: NF4163_low_21
Description: NF4163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4163_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 37417372 - 37417633
Alignment:
| Q |
1 |
aactgcatctaactcaagaccatagaaggagtccaagttcaattgacggggtggagtatgagaaaacattctaaaactgtgaagaggaaacccttaatta |
100 |
Q |
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| T |
37417372 |
aactgcatctaactcaagaccatagaaggagtccaagttcaattgacggggtggagtatgagaaaacattctaaaactgtgaagaggaaacccttt---- |
37417467 |
T |
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| Q |
101 |
gatttctctcctattctcttttgtctgttcgcaatctttcaataaaattgtttattcttttccattcaattctttggttcctaacaaacacttaagacta |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37417468 |
gatttctctcctattctcttttgtccgttcgcaatctttcaataaaattgtttattcttttccattcaattctttggttcctaacaaacacttaagacta |
37417567 |
T |
|
| Q |
201 |
atctgtggacataatatagaaaactatgtgaagcttaaaatcaaatgcacttacatctccattcat |
266 |
Q |
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| T |
37417568 |
atatgtggacataatatagaaaactatgtgaagcttaaaatcaaatgcacttacatctccattcat |
37417633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 37424904 - 37425165
Alignment:
| Q |
1 |
aactgcatctaactcaagaccatagaaggagtccaagttcaattgacggggtggagtatgagaaaacattctaaaactgtgaagaggaaacccttaatta |
100 |
Q |
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| T |
37424904 |
aactgcatctaactcaagaccatagaaggagtccaagttcaattgactgggtggagtttgagaaaacattctaaaactgtgaagaggaaacccttt---- |
37424999 |
T |
|
| Q |
101 |
gatttctctcctattctcttttgtctgttcgcaatctttcaataaaattgtttattcttttccattcaattctttggttcctaacaaacacttaagacta |
200 |
Q |
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| T |
37425000 |
gatttctctcctattctcttttgtccgttctcaatctttcaataaaattgtttattcttttccattcaattctttggttcctaacaaacacttaagacta |
37425099 |
T |
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| Q |
201 |
atctgtggacataatatagaaaactatgtgaagcttaaaatcaaatgcacttacatctccattcat |
266 |
Q |
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| T |
37425100 |
atatgtggacataatatagaaaactatgtgaagcttaaaatcaaatgcacttacatctccattcat |
37425165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 34317819 - 34317906
Alignment:
| Q |
100 |
agatttctctcctattctcttttgtctgttcgcaatctttcaataaaattgtttattcttttccattcaattctttggttcctaacaa |
187 |
Q |
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| T |
34317819 |
agatttctctcctattctcctttatcctttctcaatctttcaataaaatagttcattattttcaattcaattcttaggttcctaacaa |
34317906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 43672413 - 43672464
Alignment:
| Q |
135 |
tctttcaataaaattgtttattcttttccattcaattctttggttcctaaca |
186 |
Q |
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| T |
43672413 |
tctttcaataaaattgtccattcttttccattcaattcttgggttcctaaca |
43672464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 187
Target Start/End: Original strand, 10057358 - 10057440
Alignment:
| Q |
105 |
tctctcctattctcttttgtctgttcgcaatctttcaataaaattgtttattcttttccattcaattctttggttcctaacaa |
187 |
Q |
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|||||||||||||| |||||| ||| ||||||||||||||||||||| ||| |||| |||||| ||||||||||||||| |
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| T |
10057358 |
tctctcctattctcgtttgtcctttctcaatctttcaataaaattgttcgttcctttcatatcaattttttggttcctaacaa |
10057440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 7872062 - 7872146
Alignment:
| Q |
100 |
agatttctctcctattctcttttgtctgttcgcaatctttcaataaaattgtttattcttttccattcaattctttggttcctaa |
184 |
Q |
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||||||||||| ||||||| ||| || || |||| |||||||||||||||| ||||||||| ||||||| ||| ||||||||| |
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| T |
7872062 |
agatttctctcatattctcatttatcctttatcaatatttcaataaaattgttcattcttttcaattcaatacttgggttcctaa |
7872146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 52127714 - 52127667
Alignment:
| Q |
137 |
tttcaataaaattgtttattcttttccattcaattctttggttcctaa |
184 |
Q |
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| T |
52127714 |
tttcaataaaattgttgattcttttcaattcaattattgggttcctaa |
52127667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 50891041 - 50891122
Alignment:
| Q |
107 |
tctcctattctcttttgtctgttcgcaatctttcaataaaattgtttattcttttccattcaattctttggttcctaacaaa |
188 |
Q |
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||||| |||||| ||| || ||| ||||||||||||||||||| | ||| ||||| ||| || |||| ||||||||||||| |
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| T |
50891041 |
tctcccattctcctttatcctttctcaatctttcaataaaattgctcatttttttcaatttaactcttgggttcctaacaaa |
50891122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 53504744 - 53504789
Alignment:
| Q |
149 |
tgtttattcttttccattcaattctttggttcctaacaaacactta |
194 |
Q |
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| T |
53504744 |
tgttttttctattccattcaattatttggttcctaacaaacgctta |
53504789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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