View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4163_low_23 (Length: 263)
Name: NF4163_low_23
Description: NF4163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4163_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 30 - 249
Target Start/End: Original strand, 35232579 - 35232798
Alignment:
| Q |
30 |
ttatatacaaaaacctttgaaatcaaagtttttaataatgtgataacatgtgactgaaaattttaataatggcaatagatcaaaatgaaaaatcatgtac |
129 |
Q |
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| T |
35232579 |
ttatatacaaaaacctttgaaatcaaagtttttaataatgtgataacatgtgactgaaaattttaataatggcaatagatcaaaatgaaaaatcatgtac |
35232678 |
T |
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| Q |
130 |
aacaggacatagattgttggtttataaacattctttgttgttggcacgatccattctttatccaccaagaataaattagtaaacctctactgaaaaactt |
229 |
Q |
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| T |
35232679 |
aacaggacatagattgttggtttataatcattctttgttgttggcacgatccattctttatccaccaagaataaattagtaaacctctactgaaaaactt |
35232778 |
T |
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| Q |
230 |
ggtggaaaaacattcttgtt |
249 |
Q |
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|||||||||||||||||||| |
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| T |
35232779 |
ggtggaaaaacattcttgtt |
35232798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 29284853 - 29284901
Alignment:
| Q |
201 |
taaattagtaaacctctactgaaaaacttggtggaaaaacattcttgtt |
249 |
Q |
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| T |
29284853 |
taaattagtaaacctttactgaaaaacttggtggaaaaacattcttgtt |
29284901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 249
Target Start/End: Original strand, 29287022 - 29287151
Alignment:
| Q |
118 |
aaaatcatgtacaacaggacatagattgttggtttataaacattctttgttgttggcacgatccattctttatccaccaaga--ataaattagtaaacct |
215 |
Q |
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| T |
29287022 |
aaaatcatgtacaataggacatagattgttggtttataatca---tttattgttggcgcgatcccttctctaaccaccaatacgagaaatttgtaaacct |
29287118 |
T |
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| Q |
216 |
ctactgaaaaacttggtggaaaaacattcttgtt |
249 |
Q |
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| T |
29287119 |
ctaacg-aaaacttggttgaaaagcattcttgtt |
29287151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 249
Target Start/End: Original strand, 25999768 - 25999975
Alignment:
| Q |
43 |
cctttgaaatcaaagt-ttttaataatgtgataacatgtgactgaaaattttaataatggcaatagatcaaaatgaaaaatcatgtacaacaggacatag |
141 |
Q |
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| T |
25999768 |
cctttgaaatcaaactcttttaataatgtgacaacatgtgactgaaa-ttttaataatgatagtagatccaattgaaaattcatgtacaacaggacatag |
25999866 |
T |
|
| Q |
142 |
attgttggtttataaacattctttgttgttggcacgatccattctttatccaccaagaat-----aaattagtaaacctctactgaaaaacttggtggaa |
236 |
Q |
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| T |
25999867 |
atcgttggtttataatcattctttgttggtg---cgatccctcttctgtccaccaagaattcgagaaatttgtaaacctctactg-aaagcttggttgaa |
25999962 |
T |
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| Q |
237 |
aaacattcttgtt |
249 |
Q |
| |
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|| |||||||||| |
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| T |
25999963 |
aagcattcttgtt |
25999975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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