View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4163_low_24 (Length: 259)
Name: NF4163_low_24
Description: NF4163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4163_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 43194606 - 43194846
Alignment:
| Q |
1 |
caatatttcaattgtcgtgtttcttttaatttacatgatagcttggtggcccaacctggaacgtaaaacttggaagaagagacgccaagacggctagtca |
100 |
Q |
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| T |
43194606 |
caatatttcaactgtcgtgtttcttttaatttacatgatagcttggtggcccaacctggaacgtaaaacttggaagaagagacgccaagacggctagtca |
43194705 |
T |
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| Q |
101 |
atctgctgctaacaccgcgatcccagcaccaacttcaaaccttaatacactcacctcaatgtttagtgctgttggtctttctagcaaggacttggtcaca |
200 |
Q |
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| T |
43194706 |
atctgctgctaacaccgcaatcccggcaccaacttcaaaccttaatacactcacctcaatgtttagtgctgttggtctttccagcaaggacttggtcaca |
43194805 |
T |
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| Q |
201 |
ttgtcaggtgcaattgcattgatttggacgataagcctatg |
241 |
Q |
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| T |
43194806 |
ttgtcaggtgcaattgcattgatttggacgataagcctatg |
43194846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 39 - 209
Target Start/End: Original strand, 43180297 - 43180467
Alignment:
| Q |
39 |
tagcttggtggcccaacctggaacgtaaaacttggaagaagagacgccaagacggctagtcaatctgctgctaacaccgcgatcccagcaccaacttcaa |
138 |
Q |
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| T |
43180297 |
tagcttggaggtccaacctggaatgtaaaacttggaagaagagatgctaaaacggctagtcaatccgctgctaacactgccatcccggcaccaacttcca |
43180396 |
T |
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| Q |
139 |
accttaatacactcacctcaatgtttagtgctgttggtctttctagcaaggacttggtcacattgtcaggt |
209 |
Q |
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| T |
43180397 |
acctcaatacactcacctcaatgtttagcgccgttggtctttctagcaaagatttggtcacattgtcaggt |
43180467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 23 - 221
Target Start/End: Original strand, 43189133 - 43189331
Alignment:
| Q |
23 |
cttttaatttacatgatagcttggtggcccaacctggaacgtaaaacttggaagaagagacgccaagacggctagtcaatctgctgctaacaccgcgatc |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| || ||||||||||||| ||| ||||| || ||| |
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| T |
43189133 |
cttttaatttacatgatagcttggtggcccaacctggaatgtaaaacttggaagaagagatgccacaactgctagtcaatctgatgcgaacactgccatc |
43189232 |
T |
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| Q |
123 |
ccagcaccaacttcaaaccttaatacactcacctcaatgtttagtgctgttggtctttctagcaaggacttggtcacattgtcaggtgcaattgcattg |
221 |
Q |
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| T |
43189233 |
ccaagaccaacttccaaccttaatatactcacctcaatgtttaagaatgttggtctttccaccaaggacttagtcgcattgtcaggtacaattccattg |
43189331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 205
Target Start/End: Original strand, 36190635 - 36190800
Alignment:
| Q |
40 |
agcttggtggcccaacctggaacgtaaaacttggaagaagagacgccaagacggctagtcaatctgctgctaacaccgcgatcccagcaccaacttcaaa |
139 |
Q |
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||||||| |||||||| ||| | || ||||||||||||||||| || | || |||||| |||| ||||| |||| | ||||||||||| ||||||| |
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| T |
36190635 |
agcttggaggcccaacatgggatgtgaaacttggaagaagagatgcaagaacagctagtaaatcagctgcaaacaatgacatcccagcacccacttcaag |
36190734 |
T |
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| Q |
140 |
ccttaatacactcacctcaatgtttagtgctgttggtctttctagcaaggacttggtcacattgtc |
205 |
Q |
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||| || ||||| ||||| ||||| |||| |||||||||| | |||||| |||||| ||||||| |
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| T |
36190735 |
cctcaaccaactcatctcaaggtttaatgctcttggtctttccaccaaggatttggtcgcattgtc |
36190800 |
T |
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