View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4163_low_25 (Length: 254)
Name: NF4163_low_25
Description: NF4163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4163_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 29144894 - 29145140
Alignment:
| Q |
1 |
tattagtgcaaatatttgcaactgggatgcaacttctatcaagagtcattttggttcaagggacttacatttttgcactcattgcttatcgacatattgt |
100 |
Q |
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| T |
29144894 |
tattagtgcaaatatttgcaactgggatgcaacttctatcaagagtcattttggttcaagggacttacatttttgcactcattgcttatcgacatattgt |
29144993 |
T |
|
| Q |
101 |
tgctgctatttgtgttgctccctttgcactctattttgaaaggtatttcattttcaattctatattttatttgcaaattatttcattaatctacc---ta |
197 |
Q |
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| T |
29144994 |
tgctgctatttgtgttgctccttttgcactctattttgaaaggtaattcattttcaattctatattttatttgcaaattgtttcattaatctacctagta |
29145093 |
T |
|
| Q |
198 |
agtatggtgctctttcccatgcacttcacttccctttttgttctgtg |
244 |
Q |
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||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
29145094 |
tatatagtactctttcccatgcacttcacttccctttttgttctgtg |
29145140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 29227079 - 29226833
Alignment:
| Q |
1 |
tattagtgcaaatatttgcaactgggatgcaacttctatcaagagtcattttggttcaagggacttacatttttgcactcattgcttatcgacatattgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29227079 |
tattagtgcaaatatttgcaactgggatgcaacttctatcaagagtcattttggttcaagggacttacatttttgcactcattgcttatcgacatattgt |
29226980 |
T |
|
| Q |
101 |
tgctgctatttgtgttgctccctttgcactctattttgaaaggtatttcattttcaattctatattttatttgcaaattatttcattaatctacc---ta |
197 |
Q |
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| T |
29226979 |
tgctgctatttgtgttgctccttttgcactctattttgaaaggtaattcattttcaattctatattttatttgcaaattgttgcattaatctacctagta |
29226880 |
T |
|
| Q |
198 |
agtatggtgctctttcccatgcacttcacttccctttttgttctgtg |
244 |
Q |
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||| || ||||||||||||||||| |||||||||||||||||||| |
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| T |
29226879 |
tatatagtactctttcccatgcactttacttccctttttgttctgtg |
29226833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 5306952 - 5306809
Alignment:
| Q |
1 |
tattagtgcaaatatttgcaactgggatgcaacttctatcaagagtcattttggttcaagggacttacatttttgcactcattgcttatcgacatattgt |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||| ||||||| ||||| |||||||| || |||| |||||||||||||| ||| |||||||| ||||| |
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| T |
5306952 |
tattagtgcaaatatttggaactgggatacaacttttatcaagggtcatcttggttcagggcactttcatttttgcactcaatgcatatcgacaaattgt |
5306853 |
T |
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| Q |
101 |
tgctgctatttgtgttgctccctttgcactctattttgaaaggt |
144 |
Q |
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||||||| ||||||| || ||||||||||| ||||||||||||| |
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| T |
5306852 |
tgctgctgtttgtgtcgccccctttgcactttattttgaaaggt |
5306809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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