View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4163_low_26 (Length: 252)
Name: NF4163_low_26
Description: NF4163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4163_low_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 35917435 - 35917668
Alignment:
| Q |
7 |
ttgggttcctttgctagtgcatcctgtattctaccaacaggctcagcaacagacctgaattcaagagtaccaacacatgttgaagccaacaaaggagtga |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35917435 |
ttgggttcctttgctagtgcatcctgtattctaccaacaggctcagcaacagacctgaactcaagagtaccaacacatgttgaagccaacaaaggagtga |
35917534 |
T |
|
| Q |
107 |
aaaccatatgattccttggtgatatgcagacaacatcgtaaattcttgtgtctagccctttaagaaaccgacaagcagcccaaccggtaccaagaacaac |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35917535 |
aaaccatatgattccttggtgatatgcagacaacatcgtaaatccttgtgtctagccctttaagaaaccgacaagcagcccaaccggtaccgagaacaac |
35917634 |
T |
|
| Q |
207 |
cactctaggctcttcacctggttttgttgtctct |
240 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||| |
|
|
| T |
35917635 |
cactctaggcttttcacctggttttgttgcctct |
35917668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 30221943 - 30222021
Alignment:
| Q |
41 |
caacaggctcagcaacagacctgaattcaagagtaccaacacatgttgaagccaacaaaggagtgaaaaccatatgatt |
119 |
Q |
| |
|
||||||| ||||||||||| | || |||||||| |||||||| || |||||||| | ||| ||||||||||| ||||| |
|
|
| T |
30221943 |
caacaggttcagcaacagatcgaaactcaagagttccaacacaagtagaagccaaaagaggtgtgaaaaccatgtgatt |
30222021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 128
Target Start/End: Original strand, 25868017 - 25868111
Alignment:
| Q |
34 |
attctaccaacaggctcagcaacagacctgaattcaagagtaccaacacatgttgaagccaacaaaggagtgaaaaccatatgattccttggtga |
128 |
Q |
| |
|
||||| |||| ||| |||||||| || || || |||||||| |||||||| ||||||||||| | ||| || || |||||||| ||||| ||||| |
|
|
| T |
25868017 |
attcttccaataggttcagcaaccgatctaaactcaagagttccaacacaagttgaagccaaaagaggtgtaaacaccatatggttcctaggtga |
25868111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University