View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4163_low_34 (Length: 240)
Name: NF4163_low_34
Description: NF4163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4163_low_34 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 240
Target Start/End: Complemental strand, 38991116 - 38990889
Alignment:
| Q |
13 |
caaatacaacatagttagtattgtacatggaatctatataggacatatgaatctggcatttaaaaattaccnnnnnnncttcttaccaactaaaatgaat |
112 |
Q |
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| T |
38991116 |
caaatacaacatagttagtattgtacatggaatctacataggacatatgaatctggcatttaaaaattaccttttttccttcttaccaactaaaatgaat |
38991017 |
T |
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| Q |
113 |
gaacataattagatggaaaaggtacatgtaaaagataaaagtaggtcaaaggaaataacataaataaaatacatataagtcattgaccacaaagatgttc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38991016 |
gaacataattagatggaaaaggtacatgtaaaagataaaagtaggtcaaaggaaataacatagataaaatacatataagtcattgaccacaaagatgttc |
38990917 |
T |
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| Q |
213 |
aaactacatattacagatatccaaactc |
240 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
38990916 |
aaactacatattacagatatccaaactc |
38990889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 13 - 155
Target Start/End: Original strand, 37706915 - 37707056
Alignment:
| Q |
13 |
caaatacaacatagttagtattgtacatggaatctatataggacatatgaatctggcatttaaaaattaccnnnnnnncttcttaccaactaaaatgaat |
112 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| |||| ||||| ||||||| |
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| T |
37706915 |
caaatacaacatagttagtgttgtacatggaatctatataggacatatgaaactgacatttaaaaattacc-ttttttcttgttactaactacaatgaat |
37707013 |
T |
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| Q |
113 |
gaacataattagatggaaaaggtacatgtaaaagataaaagta |
155 |
Q |
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| T |
37707014 |
gagcataattagatggaaaaggtacatgtaaaagataaaagta |
37707056 |
T |
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