View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4163_low_38 (Length: 238)
Name: NF4163_low_38
Description: NF4163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4163_low_38 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] scaffold0009 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 81 - 238
Target Start/End: Complemental strand, 28285335 - 28285178
Alignment:
| Q |
81 |
caagaacctatgctattaatattgctatcatagtagcattatttacggtcaaaggtgtattatcagatgacacaattccgattcctgctgaaaaaactca |
180 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28285335 |
caagaacctatgctattaatattgctatcatagtattattatttacggtcaaaggtgtattatcagatgacacaattccgattcctgctgaaaaaactca |
28285236 |
T |
|
| Q |
181 |
attagattcatggtttaatagcaatgttggtccattagaacaacgaaaacgtgccctt |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
28285235 |
attagattcatggtttaatagcaatgttggtccattagaacaaagaaaaagtgccctt |
28285178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 81 - 222
Target Start/End: Original strand, 172267 - 172408
Alignment:
| Q |
81 |
caagaacctatgctattaatattgctatcatagtagcattatttacggtcaaaggtgtattatcagatgacacaattccgattcctgctgaaaaaactca |
180 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||| | |||||| | || ||||||||||||||||||||| |||||||| | | | | || |
|
|
| T |
172267 |
caagaacctatatgattaatgttgctatcatagtagcattattcatggtcaatgttgcattatcagatgacacaattccagttcctgctaacagagccca |
172366 |
T |
|
| Q |
181 |
attagattcatggtttaatagcaatgttggtccattagaaca |
222 |
Q |
| |
|
| |||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
172367 |
agtagattcatggtttaatacgaatgtaggtccattagaaca |
172408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 81 - 222
Target Start/End: Original strand, 177780 - 177921
Alignment:
| Q |
81 |
caagaacctatgctattaatattgctatcatagtagcattatttacggtcaaaggtgtattatcagatgacacaattccgattcctgctgaaaaaactca |
180 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||||| | |||||| | || ||||||||||||||||||||| |||||||| | | | | || |
|
|
| T |
177780 |
caagaacctatatgattaatgttgctatcatagtagcattattcatggtcaatgttgcattatcagatgacacaattccagttcctgctaacagagccca |
177879 |
T |
|
| Q |
181 |
attagattcatggtttaatagcaatgttggtccattagaaca |
222 |
Q |
| |
|
| |||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
177880 |
agtagattcatggtttaatacgaatgtaggtccattagaaca |
177921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 229
Target Start/End: Complemental strand, 31115740 - 31115604
Alignment:
| Q |
93 |
ctattaatattgctatcatagtagcattatttacggtcaaaggtgtattatcagatgacacaattccgattcctgctgaaaaaactcaattagattcatg |
192 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| || | ||| | |||||||||||||||| || ||| ||||||||| | | | | ||||||||| |||| |
|
|
| T |
31115740 |
ctatcaatgttgctatcatagtagcattattcacagccaatgttgtattatcagatgacttaactccaattcctgctaatagagcccaattagatgcatg |
31115641 |
T |
|
| Q |
193 |
gtttaatagcaatgttggtccattagaacaacgaaaa |
229 |
Q |
| |
|
|||||||| |||||| || ||||||| |||| ||||| |
|
|
| T |
31115640 |
gtttaataccaatgtgggaccattagcacaaagaaaa |
31115604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University