View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4163_low_5 (Length: 467)
Name: NF4163_low_5
Description: NF4163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4163_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 11 - 453
Target Start/End: Original strand, 2676032 - 2676468
Alignment:
| Q |
11 |
caaaggataaaacccaagacacaactggtcaagcaagagacaagggttatgaaatgggccaggctacaaaagaaactgcccaatcaggaaaggacaactc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2676032 |
caaaggataaaacccaagacacaactggtcaagcaagagacaagggttatgaaatgggccaggctacaaaagaaactgcccaatcaggaaaggacaactc |
2676131 |
T |
|
| Q |
111 |
agctgggtttttgcaacagacaggtgagaaggttaagggtatggcacaaggtgcaactgaagcagttaagaacactttaggaatgaataatgatgaggaa |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2676132 |
agctgggtttttgcaacagacaggtgagaaggttaagggtatggcacaaggtgcaactgaagcagttaagaacactttaggaatgaataatgatgaggaa |
2676231 |
T |
|
| Q |
211 |
gacaaggaccatttcacaacaaaaacaactacaacaacccgtcgtaacgtcgttgattgagattattagctactaatactatgtttcgataattttgtat |
310 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
2676232 |
gacaaggaccatttcacaacaaaaacaactacaacaacccgtcgtaacgtcgttgattgagattattagc------tactatgtttcgataatgttgtat |
2676325 |
T |
|
| Q |
311 |
tgtaatttgtttttcttgaatttggttttgaaccaaacgcacnnnnnnnnagaataagttgcgattccctcatatctatgagtgggaaatgtatcatgta |
410 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2676326 |
tgtaatttgtttttcttgaatttggttttgaaccaaacgcacttttttatagaataagttgcgattccctcatatctaggagtgggaaatgtatcatgta |
2676425 |
T |
|
| Q |
411 |
atttctattattctagtttgaactttgttcttgtgataataat |
453 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2676426 |
atttctattattctagtttgaactttgttcttgtgataataat |
2676468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 11 - 429
Target Start/End: Original strand, 2667014 - 2667431
Alignment:
| Q |
11 |
caaaggataaaacccaagacacaactggtcaagcaagagacaagggttatgaaatgggccaggctacaaaagaaactgcccaatcaggaaaggacaactc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2667014 |
caaaggataaaacccaagacacaactggtcaagcaagagacaagggttatgaaatgggccaggctacaaaagaaactgcccaatcaggaaaggacaactc |
2667113 |
T |
|
| Q |
111 |
agctgggtttttgcaacagacaggtgagaaggttaagggtatggcacaaggtgcaactgaagcagttaagaacactttaggaatgaataatgatgaggaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2667114 |
agctgggtttttgcaacagacaggtgagaaggttaagggtatggcacaaggtgcaactgaagcagttaagaacactttaggaatgaataatgatgaggaa |
2667213 |
T |
|
| Q |
211 |
gacaaggaccatttcacaacaaaaacaactacaacaacccgtcgtaacgtcgttgattgagattattagctactaatactatgtttcgataattttgtat |
310 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
2667214 |
gacaaggaccatttcacaacaaaaacaactacaacaacccgtcgtaacgtcgttgattgagattattagc------tactatgtttcgataatgttgtat |
2667307 |
T |
|
| Q |
311 |
tgtaatttgtttttcttgaatttggttttgaaccaaacgcacnnnnnnnnagaataagttgcgattccctcatatcta------tgagtgggaaatgtat |
404 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||| |||||||||| ||||||||||||||||| ||| ||||||||||| |
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| T |
2667308 |
tgtaatttgtttttcttgaatttggtttt-taccaaatgcactttcttttagaataagttacgattccctcatatctagagaggtgaaagggaaatgtat |
2667406 |
T |
|
| Q |
405 |
catgtaatttctattattctagttt |
429 |
Q |
| |
|
||||||| |||||| ||||||||| |
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|
| T |
2667407 |
tatgtaatctctatttttctagttt |
2667431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 2682060 - 2682281
Alignment:
| Q |
11 |
caaaggataaaacccaagacacaactggtcaagcaagagacaagggttatgaaatgggccaggctacaaaagaaactgcccaatcaggaaaggacaactc |
110 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| ||||| || || | || || |||||| | || ||||||||||||||||||||||| |||||||| |
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| T |
2682060 |
caaaggaaaaagcccaagacacaactggtcaagctagagaaaaaggatcggagattggccagtcaaccaaagaaactgcccaatcaggaaaagacaactc |
2682159 |
T |
|
| Q |
111 |
agctgggtttttgcaacagacaggtgagaaggttaagggtatggcacaaggtgcaactgaagcagttaagaacactttaggaatgaataatgatgaggaa |
210 |
Q |
| |
|
||| ||||| || || |||||||| || ||||||||||||||||| ||| |||| ||||||||||||||||||||||| |||||| |||| |||||| |
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| T |
2682160 |
agcagggttcttacagcagacaggagaaaaggttaagggtatggcccaaagtgctactgaagcagttaagaacacttttggaatggcacatgacgaggaa |
2682259 |
T |
|
| Q |
211 |
gacaaggaccatttcacaacaa |
232 |
Q |
| |
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|| ||||||||| ||||||||| |
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|
| T |
2682260 |
gataaggaccatatcacaacaa |
2682281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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