View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4163_low_7 (Length: 405)
Name: NF4163_low_7
Description: NF4163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4163_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 188 - 390
Target Start/End: Complemental strand, 34362373 - 34362172
Alignment:
| Q |
188 |
atcatattcaaaaagtcgcaaaaagtcttgggtatgacgaccatgcatatcaccccgaagagaatcacaagattcacaacattaagaacaagttaaagta |
287 |
Q |
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| T |
34362373 |
atcatattcaaaaagtcgcaaaaagtcttgg-tatgacgaccatgcatatcgccccgaagagaatcacaagattcacaacattaagaacaagttaaagta |
34362275 |
T |
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| Q |
288 |
ggcgcgacaatgacattgattaattttaaattgaaaatttcattacttggtttctttcaatgacacacaaaactatataagattatttttctgcaaaaat |
387 |
Q |
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| T |
34362274 |
ggcgcgacaatgacattgattaattttaaaatgaaaatttcattacttggtttctttcaatgacacacaaaactatataagattatttttctgcaaaaat |
34362175 |
T |
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| Q |
388 |
att |
390 |
Q |
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||| |
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| T |
34362174 |
att |
34362172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 34362461 - 34362397
Alignment:
| Q |
125 |
gcatcttcatggtttctgttaaaagataaactttgtctaaatatcttatttgtaggccaagaaat |
189 |
Q |
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| T |
34362461 |
gcatcttcatggtttctcttaaaagataaactttgtctaaatatcttatttgtaggccaagaaat |
34362397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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