View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4163_low_8 (Length: 399)

Name: NF4163_low_8
Description: NF4163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4163_low_8
NF4163_low_8
[»] chr5 (1 HSPs)
chr5 (17-338)||(26416093-26416414)
[»] chr2 (1 HSPs)
chr2 (105-143)||(14432763-14432801)
[»] chr8 (1 HSPs)
chr8 (105-138)||(4347051-4347084)
[»] chr4 (1 HSPs)
chr4 (105-134)||(8462601-8462630)
[»] chr1 (1 HSPs)
chr1 (105-134)||(50818606-50818635)
[»] chr6 (1 HSPs)
chr6 (105-137)||(25435379-25435411)
[»] chr3 (1 HSPs)
chr3 (105-141)||(13496994-13497030)


Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 338
Target Start/End: Original strand, 26416093 - 26416414
Alignment:
Q  17 acaatacctcacagttcaggtatataatatatctccctccctttttataaccacattttcgcactatagtttttaattagagctcagattaatatatttc 116  Q
    |||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||||||||||| |||| ||||||||||||    
T  26416093 acaatacctcactgttcaggtatataatatatctcactccctttttataagcacattttcgcactctaatttttaattagagttcaggttaatatatttc 26416192  T
Q  117 attttgacttgttcaaaataaattagagccgaggtagcaattatgttcttatgaagtaatttaattaatacatattcaatttttctcatgcagtcaggac 216  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26416193 attttgacttattcaaaataaattagaaccgaggtagcaattatgttcttatgaagtaatttaattaatacatattcaatttttctcatgcagtcaggac 26416292  T
Q  217 aaatacaattgtgtaacacaaagatgaatatgaaaacacaagaatcaaaaagagagtaccctttacctgaaaaatcatctcttggtcatttaagcttaga 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26416293 aaatacaattgtgtaacacaaagatgaatatgaaaacacaagaatcaaaaagagagtaccctttacctgaaaaatcatctcttggtcatttaagcttaga 26416392  T
Q  317 ccttgagcttaatttgacatgt 338  Q
    ||||||||||||||||||||||    
T  26416393 ccttgagcttaatttgacatgt 26416414  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 143
Target Start/End: Complemental strand, 14432801 - 14432763
Alignment:
Q  105 ttaatatatttcattttgacttgttcaaaataaattaga 143  Q
    ||||||||||||||||| |||||||||||| ||||||||    
T  14432801 ttaatatatttcattttaacttgttcaaaaaaaattaga 14432763  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 138
Target Start/End: Complemental strand, 4347084 - 4347051
Alignment:
Q  105 ttaatatatttcattttgacttgttcaaaataaa 138  Q
    ||||||||||||||||||||||||| ||||||||    
T  4347084 ttaatatatttcattttgacttgttgaaaataaa 4347051  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 134
Target Start/End: Original strand, 8462601 - 8462630
Alignment:
Q  105 ttaatatatttcattttgacttgttcaaaa 134  Q
    ||||||||||||||||||||||||||||||    
T  8462601 ttaatatatttcattttgacttgttcaaaa 8462630  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 134
Target Start/End: Original strand, 50818606 - 50818635
Alignment:
Q  105 ttaatatatttcattttgacttgttcaaaa 134  Q
    ||||||||||||||||||||||||||||||    
T  50818606 ttaatatatttcattttgacttgttcaaaa 50818635  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 25435379 - 25435411
Alignment:
Q  105 ttaatatatttcattttgacttgttcaaaataa 137  Q
    |||||||| ||||||||||||||||||||||||    
T  25435379 ttaatataattcattttgacttgttcaaaataa 25435411  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 13496994 - 13497030
Alignment:
Q  105 ttaatatatttcattttgacttgttcaaaataaatta 141  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  13496994 ttaatatatttcattttgacttgttaaaaaaaaatta 13497030  T

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