View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4163_low_9 (Length: 389)

Name: NF4163_low_9
Description: NF4163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4163_low_9
NF4163_low_9
[»] chr2 (24 HSPs)
chr2 (18-381)||(15170969-15171332)
chr2 (231-293)||(9478231-9478293)
chr2 (240-293)||(40837504-40837557)
chr2 (179-219)||(9477859-9477899)
chr2 (229-297)||(40672868-40672936)
chr2 (231-289)||(10143104-10143162)
chr2 (200-293)||(43808477-43808570)
chr2 (180-293)||(4550658-4550771)
chr2 (182-294)||(32098383-32098498)
chr2 (229-281)||(5045245-5045297)
chr2 (180-219)||(29316925-29316964)
chr2 (231-282)||(38239638-38239689)
chr2 (231-293)||(3673739-3673801)
chr2 (231-293)||(10150687-10150749)
chr2 (231-293)||(11344360-11344422)
chr2 (186-291)||(29503161-29503264)
chr2 (231-293)||(37053526-37053588)
chr2 (232-293)||(3423844-3423905)
chr2 (245-282)||(6988061-6988098)
chr2 (252-293)||(33192146-33192187)
chr2 (230-294)||(7282949-7283013)
chr2 (231-279)||(13864582-13864630)
chr2 (179-211)||(16785428-16785460)
chr2 (231-279)||(43431534-43431582)
[»] scaffold0024 (1 HSPs)
scaffold0024 (180-293)||(27457-27570)
[»] chr6 (22 HSPs)
chr6 (180-288)||(32975859-32975967)
chr6 (180-291)||(33068639-33068750)
chr6 (179-271)||(31461558-31461650)
chr6 (231-290)||(24836278-24836337)
chr6 (183-278)||(2206474-2206569)
chr6 (184-261)||(4003708-4003785)
chr6 (232-292)||(29940729-29940789)
chr6 (238-293)||(29274305-29274360)
chr6 (237-280)||(34544539-34544582)
chr6 (184-290)||(9833176-9833282)
chr6 (231-289)||(27893979-27894037)
chr6 (180-218)||(32408827-32408865)
chr6 (181-219)||(33818102-33818140)
chr6 (180-293)||(3155057-3155170)
chr6 (182-219)||(4247234-4247271)
chr6 (234-271)||(5554863-5554900)
chr6 (180-217)||(7480265-7480302)
chr6 (180-289)||(9027458-9027567)
chr6 (252-289)||(29269849-29269886)
chr6 (235-288)||(33500562-33500615)
chr6 (183-219)||(7268049-7268085)
chr6 (231-271)||(33116537-33116577)
[»] chr4 (22 HSPs)
chr4 (175-295)||(24929369-24929489)
chr4 (181-280)||(8422926-8423025)
chr4 (187-293)||(30024588-30024694)
chr4 (182-294)||(21043288-21043401)
chr4 (230-294)||(51044533-51044598)
chr4 (238-292)||(5131309-5131363)
chr4 (236-293)||(44119238-44119295)
chr4 (231-294)||(4191671-4191735)
chr4 (230-290)||(4798638-4798698)
chr4 (238-293)||(29373963-29374018)
chr4 (184-271)||(40709478-40709565)
chr4 (231-297)||(52294038-52294105)
chr4 (250-293)||(53626727-53626770)
chr4 (242-293)||(54327525-54327576)
chr4 (187-282)||(55599054-55599149)
chr4 (183-293)||(22684592-22684702)
chr4 (231-293)||(42321955-42322017)
chr4 (195-293)||(49219035-49219133)
chr4 (237-294)||(2431535-2431592)
chr4 (238-282)||(19422357-19422401)
chr4 (240-292)||(23815311-23815363)
chr4 (231-291)||(47970250-47970310)
[»] chr8 (15 HSPs)
chr8 (179-293)||(4558678-4558792)
chr8 (182-292)||(29699137-29699247)
chr8 (175-282)||(11119086-11119193)
chr8 (231-275)||(9928188-9928232)
chr8 (231-289)||(40728498-40728556)
chr8 (180-289)||(14482083-14482192)
chr8 (180-271)||(26055966-26056057)
chr8 (182-268)||(12972739-12972825)
chr8 (179-293)||(41336721-41336835)
chr8 (238-292)||(42597340-42597394)
chr8 (180-213)||(7918579-7918612)
chr8 (231-276)||(11188248-11188293)
chr8 (242-282)||(26820142-26820182)
chr8 (180-248)||(29592653-29592721)
chr8 (231-271)||(32506989-32507029)
[»] chr1 (29 HSPs)
chr1 (180-257)||(30237857-30237935)
chr1 (232-293)||(15360827-15360888)
chr1 (252-293)||(1879103-1879144)
chr1 (200-293)||(4200130-4200223)
chr1 (230-295)||(45327538-45327603)
chr1 (235-292)||(49517006-49517063)
chr1 (180-293)||(49560635-49560748)
chr1 (21-141)||(30257245-30257365)
chr1 (231-293)||(44032075-44032137)
chr1 (237-290)||(4338587-4338640)
chr1 (245-294)||(14737780-14737829)
chr1 (238-294)||(50319231-50319287)
chr1 (238-293)||(29007792-29007847)
chr1 (231-294)||(38651484-38651547)
chr1 (188-271)||(46504315-46504397)
chr1 (231-293)||(17269182-17269244)
chr1 (179-217)||(29666462-29666500)
chr1 (235-293)||(48830152-48830210)
chr1 (180-218)||(49365939-49365977)
chr1 (179-220)||(16322722-16322763)
chr1 (237-290)||(36151584-36151637)
chr1 (238-279)||(42169632-42169673)
chr1 (231-260)||(52190070-52190099)
chr1 (231-291)||(4202207-4202267)
chr1 (231-271)||(27140417-27140457)
chr1 (178-222)||(29415856-29415900)
chr1 (237-293)||(30815711-30815767)
chr1 (238-282)||(36641814-36641858)
chr1 (231-271)||(37593767-37593807)
[»] chr5 (20 HSPs)
chr5 (180-281)||(20982223-20982324)
chr5 (181-276)||(26516180-26516275)
chr5 (231-293)||(35135738-35135800)
chr5 (231-295)||(17756803-17756867)
chr5 (179-282)||(39257473-39257576)
chr5 (238-290)||(29117009-29117061)
chr5 (231-293)||(912724-912787)
chr5 (231-278)||(40048371-40048418)
chr5 (232-282)||(7096214-7096264)
chr5 (230-288)||(21782650-21782708)
chr5 (178-248)||(33961582-33961652)
chr5 (180-278)||(34975259-34975357)
chr5 (239-289)||(40097483-40097533)
chr5 (256-293)||(583849-583886)
chr5 (252-293)||(14295459-14295500)
chr5 (252-293)||(28586842-28586883)
chr5 (252-292)||(10303754-10303794)
chr5 (233-269)||(27153457-27153493)
chr5 (230-282)||(31208404-31208456)
chr5 (231-271)||(38033900-38033940)
[»] chr7 (24 HSPs)
chr7 (184-271)||(28844371-28844458)
chr7 (180-289)||(2223030-2223138)
chr7 (175-218)||(753355-753398)
chr7 (238-293)||(35536046-35536101)
chr7 (178-248)||(504111-504181)
chr7 (181-271)||(22388002-22388092)
chr7 (231-289)||(28165023-28165081)
chr7 (180-282)||(31341075-31341177)
chr7 (243-293)||(39591543-39591593)
chr7 (256-297)||(44239052-44239093)
chr7 (231-291)||(2894749-2894809)
chr7 (233-293)||(23918891-23918951)
chr7 (231-279)||(46223162-46223210)
chr7 (231-294)||(7244634-7244697)
chr7 (231-290)||(30496636-30496695)
chr7 (231-293)||(992002-992064)
chr7 (231-293)||(33894555-33894616)
chr7 (232-282)||(35808991-35809041)
chr7 (236-293)||(1417201-1417258)
chr7 (240-293)||(1418372-1418425)
chr7 (236-289)||(9872808-9872861)
chr7 (240-293)||(28178910-28178963)
chr7 (186-282)||(5938971-5939067)
chr7 (180-212)||(28691971-28692003)
[»] scaffold0590 (1 HSPs)
scaffold0590 (184-282)||(1161-1259)
[»] scaffold0275 (1 HSPs)
scaffold0275 (184-282)||(2716-2814)
[»] chr3 (25 HSPs)
chr3 (184-293)||(33965567-33965677)
chr3 (229-293)||(3182438-3182502)
chr3 (230-282)||(24605103-24605155)
chr3 (180-246)||(2201005-2201071)
chr3 (231-293)||(38462213-38462275)
chr3 (238-292)||(48364956-48365010)
chr3 (179-220)||(24235817-24235858)
chr3 (238-295)||(40122826-40122883)
chr3 (180-220)||(37308214-37308254)
chr3 (179-271)||(43116526-43116618)
chr3 (238-293)||(8007771-8007826)
chr3 (230-293)||(20192682-20192745)
chr3 (180-271)||(27294237-27294328)
chr3 (239-293)||(1395611-1395665)
chr3 (231-289)||(2128331-2128389)
chr3 (231-297)||(28283649-28283715)
chr3 (231-293)||(44374720-44374782)
chr3 (243-293)||(49586992-49587042)
chr3 (244-293)||(10101552-10101601)
chr3 (244-293)||(10212477-10212526)
chr3 (180-293)||(22214757-22214870)
chr3 (229-294)||(53457307-53457372)
chr3 (231-294)||(12985398-12985459)
chr3 (231-291)||(41028929-41028989)
chr3 (180-289)||(48397525-48397636)
[»] scaffold0508 (1 HSPs)
scaffold0508 (238-293)||(9851-9906)


Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 15170969 - 15171332
Alignment:
Q  18 cctttttgtaaaaagtatagtattgaaccaagggcacctgagtattactttaatgagaagattgattacttgaaagataaggttgagcctacttttgtca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15170969 cctttttgtaaaaagtatagtattgaaccaagggcacctgagtattactttaatgagaagattgattacttgaaagataaggttgagcctacttttgtca 15171068  T
Q  118 aggaaagaaggtctatgaaggtaatttttaaagatatggtttgtttttcttatattcggttttgtttggataaacaacttagttaagtgtttatagcata 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  15171069 aggaaagaaggtctatgaaggtaatttttaaagatatggtttgtttttcttatattcggttttgtttggataaataacttaattaagtgtttatagcata 15171168  T
Q  218 agctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcataaactgaagatagagtatgaacatg 317  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15171169 agctcgtattttataagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcataagctgaagatagagtatgaacatg 15171268  T
Q  318 tcataagtagtttcatgtgtttatatcagtagattcaaataagtcaaccgatcaggcctatgct 381  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  15171269 tcataagtagtttcatgtgtttatatcagtagattcagataagtcgaccgatcaggcctatgct 15171332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 9478231 - 9478293
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    |||||||||||||||||| | |||||||||||| ||||||| |||| ||||||| ||||||||    
T  9478231 taagtgtttatgtataagctatttctataacagtagataaaataaactcaaaatattttcata 9478293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 293
Target Start/End: Complemental strand, 40837557 - 40837504
Alignment:
Q  240 atgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    ||||||||| | ||||||||||| ||||||||||||||||||| ||||||||||    
T  40837557 atgtataagctatttctataacaaaagataaattaaagtcaaattgttttcata 40837504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 9477859 - 9477899
Alignment:
Q  179 ttgtttggataaacaacttagttaagtgtttatagcataag 219  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  9477859 ttgtttggataaacaacttaattaagtgtttatagcataag 9477899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 40672936 - 40672868
Alignment:
Q  229 tttaagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcataaact 297  Q
    ||||||| |||||||||||||| ||||||| | | |||||||| |||||||| | ||||||||||||||    
T  40672936 tttaagtttttatgtataagttatttctatgaaaaaagataaaataaagtcacattgttttcataaact 40672868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 10143104 - 10143162
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgtttt 289  Q
    |||||| ||||||||||||| ||||||||||| |||||||| | |||||||| ||||||    
T  10143104 taagtgcttatgtataagttatttctataacaaaagataaaattaagtcaaactgtttt 10143162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 293
Target Start/End: Original strand, 43808477 - 43808570
Alignment:
Q  200 ttaagtgtttatagcataagctcgtattttttaagtgtttatgtataag-ttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    ||||||||||||||||||||| |||||  | |||||||||||||||||| | |||| ||||||| || ||||| |||||| ||| | ||||||||    
T  43808477 ttaagtgtttatagcataagcgcgtatcatataagtgtttatgtataagctattttttataaca-aacataaaataaagttaaactattttcata 43808570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 293
Target Start/End: Original strand, 4550658 - 4550771
Alignment:
Q  180 tgtttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaagtc 279  Q
    ||||||||||||||||||| ||||    ||||||||||| ||| |||    |||||| ||||||||||||| |||| |||| | |||||||| ||| |||    
T  4550658 tgtttggataaacaacttaattaacaacttatagcataatctcttatcacataagtgcttatgtataagttgtttccataataaaagataaaataacgtc 4550757  T
Q  280 aaaatgttttcata 293  Q
    ||  ||||||||||    
T  4550758 aagctgttttcata 4550771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 182 - 294
Target Start/End: Complemental strand, 32098498 - 32098383
Alignment:
Q  182 tttggataaacaacttagttaagtgtttatagcataagctcgtatttttta---agtgtttatgtataagttttttctataacagaagataaattaaagt 278  Q
    ||||||||||||||||| ||||||| ||||||||||| |   |||  | ||   | || |||| |||||| | ||||||||||| |||||||| ||||||    
T  32098498 tttggataaacaacttacttaagtgcttatagcataaacagttatcatatactaaatgcttatatataagctatttctataacaaaagataaaataaagt 32098399  T
Q  279 caaaatgttttcataa 294  Q
    |||| |||||||||||    
T  32098398 caaagtgttttcataa 32098383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 281
Target Start/End: Complemental strand, 5045297 - 5045245
Alignment:
Q  229 tttaagtgtttatgtataagttttttctataacagaagataaattaaagtcaa 281  Q
    |||||||||||||||||||| | ||| ||||||| |||||||| |||||||||    
T  5045297 tttaagtgtttatgtataagctatttttataacaaaagataaaataaagtcaa 5045245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 29316964 - 29316925
Alignment:
Q  180 tgtttggataaacaacttagttaagtgtttatagcataag 219  Q
    ||||||||||||||||||| ||||||||||| ||||||||    
T  29316964 tgtttggataaacaacttaattaagtgtttacagcataag 29316925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 282
Target Start/End: Complemental strand, 38239689 - 38239638
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaa 282  Q
    |||||||||||||||||| | ||||||||||| |||||||| | ||||||||    
T  38239689 taagtgtttatgtataagctatttctataacaaaagataaaatcaagtcaaa 38239638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 3673739 - 3673801
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    |||||| |||||||| |||| ||||||||||| || ||||| |||||| ||| ||||||||||    
T  3673739 taagtgcttatgtattagttatttctataacaaaatataaaataaagttaaattgttttcata 3673801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 10150687 - 10150749
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    |||||||||||||||||||| ||||||||| | |||||||| ||| || |||  |||||||||    
T  10150687 taagtgtttatgtataagttatttctataataaaagataaaataacgttaaatggttttcata 10150749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 11344422 - 11344360
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    |||||| ||||| ||||| | ||||||||||| ||||||||  ||||||||| ||||||||||    
T  11344422 taagtgcttatgcataagatatttctataacaaaagataaaagaaagtcaaattgttttcata 11344360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 291
Target Start/End: Complemental strand, 29503264 - 29503161
Alignment:
Q  186 gataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatg 285  Q
    |||||| |||||| |||||  ||| |||||||||| | |||| |  ||||||||||||||| | | ||||||||||  |||||||| |||||||||| |     
T  29503264 gataaaaaacttaattaagcatttgtagcataagcacttattatagaagtgtttatgtatatgatatttctataac--aagataaaataaagtcaaacta 29503167  T
Q  286 ttttca 291  Q
    ||||||    
T  29503166 ttttca 29503161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 37053526 - 37053588
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    |||||| |||||||||   | |||||||||||||| ||||| |||||||||| ||||||||||    
T  37053526 taagtgcttatgtatagactatttctataacagaaaataaaataaagtcaaactgttttcata 37053588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 293
Target Start/End: Complemental strand, 3423905 - 3423844
Alignment:
Q  232 aagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    ||||||||||||||||||| ||| | || || |||||||| |||||||||| | ||||||||    
T  3423905 aagtgtttatgtataagttatttttgtaccaaaagataaaataaagtcaaattattttcata 3423844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 6988061 - 6988098
Alignment:
Q  245 taagttttttctataacagaagataaattaaagtcaaa 282  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  6988061 taagttttttctataacaaaagataaaataaagtcaaa 6988098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 293
Target Start/End: Original strand, 33192146 - 33192187
Alignment:
Q  252 tttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    ||||||||||| |||||||| |||||||||| ||||||||||    
T  33192146 tttctataacataagataaaataaagtcaaactgttttcata 33192187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 294
Target Start/End: Original strand, 7282949 - 7283013
Alignment:
Q  230 ttaagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcataa 294  Q
    ||||||||||||||||||| | ||| ||||| | |||| ||| | |||||||| |||||||||||    
T  7282949 ttaagtgtttatgtataagctatttttataagaaaagaaaaaatgaagtcaaactgttttcataa 7283013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 279
Target Start/End: Original strand, 13864582 - 13864630
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtc 279  Q
    |||||||||||||||||| | ||||||||||| ||| |||| |||||||    
T  13864582 taagtgtttatgtataagctatttctataacaaaaggtaaaataaagtc 13864630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 211
Target Start/End: Complemental strand, 16785460 - 16785428
Alignment:
Q  179 ttgtttggataaacaacttagttaagtgtttat 211  Q
    |||||||||||||||||||||||||||| ||||    
T  16785460 ttgtttggataaacaacttagttaagtgcttat 16785428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 43431582 - 43431534
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtc 279  Q
    |||||||| ||||||||||| |||| |||||| |||||||| |||||||    
T  43431582 taagtgttaatgtataagttatttcaataacaaaagataaagtaaagtc 43431534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 180 - 293
Target Start/End: Original strand, 27457 - 27570
Alignment:
Q  180 tgtttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaagtc 279  Q
    |||||||||||||||||||  |||  | ||||||||||||||| |||  | |||||| ||||||||||||| |||||||||||||||||||| |||||||    
T  27457 tgtttggataaacaacttaaataaacgcttatagcataagctcttatcatgtaagtgcttatgtataagttatttctataacagaagataaaataaagtc 27556  T
Q  280 aaaatgttttcata 293  Q
    ||| ||||||||||    
T  27557 aaattgttttcata 27570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 180 - 288
Target Start/End: Original strand, 32975859 - 32975967
Alignment:
Q  180 tgtttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaagtc 279  Q
    ||||| ||||||||||||| ||||| ||||||||||||||| | | |  | |||||||||||||||||||| ||||| ||||| || ||||| |||||||    
T  32975859 tgtttagataaacaacttaattaagcgtttatagcataagcgcttctcatataagtgtttatgtataagttatttctgtaacaaaatataaaataaagtc 32975958  T
Q  280 aaaatgttt 288  Q
    ||| |||||    
T  32975959 aaactgttt 32975967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 180 - 291
Target Start/End: Complemental strand, 33068750 - 33068639
Alignment:
Q  180 tgtttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaagtc 279  Q
    ||||||||| |||| |||| ||||||||||||||||||||| | |||    ||| || ||||||||||||| ||||||||||| |||||||| |||  ||    
T  33068750 tgtttggatgaacagcttaattaagtgtttatagcataagcgcttatcaaataaatgcttatgtataagttatttctataacaaaagataaaataatatc 33068651  T
Q  280 aaaatgttttca 291  Q
    ||| ||||||||    
T  33068650 aaactgttttca 33068639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 179 - 271
Target Start/End: Original strand, 31461558 - 31461650
Alignment:
Q  179 ttgtttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaa 271  Q
    |||||||| ||||||||||| ||||||| |||||  |||||| | |||| | |||||| ||||||||||| | ||||||||||| ||||||||    
T  31461558 ttgtttggttaaacaacttaattaagtgcttatattataagcacttattgtataagtgcttatgtataagctatttctataacaaaagataaa 31461650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 290
Target Start/End: Complemental strand, 24836337 - 24836278
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttc 290  Q
    ||||| |||||||||||||| ||||||||||| |||||||| |||||||||| |||||||    
T  24836337 taagtatttatgtataagttatttctataacaaaagataaaataaagtcaaattgttttc 24836278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 278
Target Start/End: Original strand, 2206474 - 2206569
Alignment:
Q  183 ttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaagt 278  Q
    ||||||||||  |||| ||||||| ||||||||||||||| |||  | ||||  ||| |||||||||| ||| ||||||| |||||||| ||||||    
T  2206474 ttggataaacttcttaattaagtgcttatagcataagctcttatcgtataagcatttctgtataagttatttttataacaaaagataaaataaagt 2206569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 261
Target Start/End: Complemental strand, 4003785 - 4003708
Alignment:
Q  184 tggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataac 261  Q
    ||||||||||||||| ||||||| |||||||||||| |  |||  | |||||| ||||||||||| | ||||||||||    
T  4003785 tggataaacaacttaattaagtgcttatagcataagtttttatgctataagtgcttatgtataagctatttctataac 4003708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 29940729 - 29940789
Alignment:
Q  232 aagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcat 292  Q
    ||||| ||| ||||||| ||||||||||||| |||||||| |||||||||  |||||||||    
T  29940729 aagtgcttaagtataagctttttctataacaaaagataaaataaagtcaatttgttttcat 29940789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 29274360 - 29274305
Alignment:
Q  238 ttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    ||||||||||| | |||||||| || |||||||| |||||||||| ||||||||||    
T  29274360 ttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcata 29274305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 280
Target Start/End: Complemental strand, 34544582 - 34544539
Alignment:
Q  237 tttatgtataagttttttctataacagaagataaattaaagtca 280  Q
    |||||||||||||| ||||||||||| |||||||| ||||||||    
T  34544582 tttatgtataagttatttctataacaaaagataaactaaagtca 34544539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 290
Target Start/End: Complemental strand, 9833282 - 9833176
Alignment:
Q  184 tggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaa 283  Q
    ||||||||||||||| ||||||||||||| |||||||   |||  | |||||| || | |||||| | ||||||| |||  | ||||| ||||||||||     
T  9833282 tggataaacaacttaattaagtgtttataacataagcgtttatcatataagtgcttctctataagatatttctattacaataaataaaataaagtcaaac 9833183  T
Q  284 tgttttc 290  Q
    |||||||    
T  9833182 tgttttc 9833176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 27893979 - 27894037
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgtttt 289  Q
    |||| ||||||||||||| | |||||| ||||||| ||||| |||||||||| ||||||    
T  27893979 taagggtttatgtataagctatttctacaacagaatataaaataaagtcaaattgtttt 27894037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 218
Target Start/End: Original strand, 32408827 - 32408865
Alignment:
Q  180 tgtttggataaacaacttagttaagtgtttatagcataa 218  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  32408827 tgtttcgataaacaacttaattaagtgtttatagcataa 32408865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 33818140 - 33818102
Alignment:
Q  181 gtttggataaacaacttagttaagtgtttatagcataag 219  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  33818140 gtttggatatacaacttaattaagtgtttatagcataag 33818102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 293
Target Start/End: Original strand, 3155057 - 3155170
Alignment:
Q  180 tgtttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaagtc 279  Q
    ||||||||||||||||||| ||||| | |||||||||||||   |||  | ||| || ||||||||||| | | ||| | ||| ||||||||  ||||||    
T  3155057 tgtttggataaacaacttatttaagcgcttatagcataagcgtttatcatataaatggttatgtataagctatctcttttacaaaagataaaacaaagtc 3155156  T
Q  280 aaaatgttttcata 293  Q
    ||| ||||| ||||    
T  3155157 aaactgtttccata 3155170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 4247271 - 4247234
Alignment:
Q  182 tttggataaacaacttagttaagtgtttatagcataag 219  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  4247271 tttggataaacaacttaattaagtgcttatagcataag 4247234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 5554900 - 5554863
Alignment:
Q  234 gtgtttatgtataagttttttctataacagaagataaa 271  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  5554900 gtgtttatgtataagttatttctataacaaaagataaa 5554863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 217
Target Start/End: Complemental strand, 7480302 - 7480265
Alignment:
Q  180 tgtttggataaacaacttagttaagtgtttatagcata 217  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  7480302 tgtttggataaacaacttagttaagtgcttataacata 7480265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 289
Target Start/End: Original strand, 9027458 - 9027567
Alignment:
Q  180 tgtttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaagtc 279  Q
    ||||||||||||||  |||  |||| | ||||||||| | | | |||| | |||||| |||| |||||| | |||||| || |||||||||| |||||||    
T  9027458 tgtttggataaacagtttaagtaagcgcttatagcatgaacacttattatataagtgcttatctataagctatttctacaatagaagataaaataaagtc 9027557  T
Q  280 aaaatgtttt 289  Q
    ||| ||||||    
T  9027558 aaactgtttt 9027567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 289
Target Start/End: Original strand, 29269849 - 29269886
Alignment:
Q  252 tttctataacagaagataaattaaagtcaaaatgtttt 289  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  29269849 tttctataacagaagataaaataaagtcaaattgtttt 29269886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 33500615 - 33500562
Alignment:
Q  235 tgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttt 288  Q
    |||||||||||||| | ||||||||||| |||||||| |||| ||||| |||||    
T  33500615 tgtttatgtataagctatttctataacaaaagataaagtaaaatcaaactgttt 33500562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 7268085 - 7268049
Alignment:
Q  183 ttggataaacaacttagttaagtgtttatagcataag 219  Q
    |||||||||||||||| |||||||||||||| |||||    
T  7268085 ttggataaacaacttaattaagtgtttatagtataag 7268049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 33116537 - 33116577
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaa 271  Q
    |||||||||||||||||||| ||||| ||||| ||||||||    
T  33116537 taagtgtttatgtataagttatttctttaacaaaagataaa 33116577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 175 - 295
Target Start/End: Original strand, 24929369 - 24929489
Alignment:
Q  175 ggttttgtttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaatta 274  Q
    |||| ||||||||||||||||||| || |||||||||| ||||| ||| |||  | ||| ||||| ||||| |  | ||||||||||| |||||||| ||    
T  24929369 ggttctgtttggataaacaacttaattgagtgtttataacataatctcttatcatataattgtttttgtatgaactatttctataacaaaagataaaata 24929468  T
Q  275 aagtcaaaatgttttcataaa 295  Q
    ||||| || ||||||||||||    
T  24929469 aagtctaactgttttcataaa 24929489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 280
Target Start/End: Complemental strand, 8423025 - 8422926
Alignment:
Q  181 gtttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaagtca 280  Q
    |||||||||||||||||| ||||||||||||||||||| |  ||||  | || ||| ||||||||||| | ||| ||||| | |||||||| ||||||||    
T  8423025 gtttggataaacaacttaattaagtgtttatagcataatcatgtatcatatatgtgcttatgtataagctatttttataaaaaaagataaaataaagtca 8422926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 187 - 293
Target Start/End: Original strand, 30024588 - 30024694
Alignment:
Q  187 ataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgt 286  Q
    |||||||||||| |||||||||||||| | ||||   |||  | |||||  ||||| ||||||| ||||||||||| |||||||| |||||| ||| |||    
T  30024588 ataaacaacttaattaagtgtttatagtagaagcgtttatcatataagtacttatgcataagttatttctataacaaaagataaaataaagtaaaattgt 30024687  T
Q  287 tttcata 293  Q
    |||||||    
T  30024688 tttcata 30024694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 294
Target Start/End: Complemental strand, 21043401 - 21043288
Alignment:
Q  182 tttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctat-aacagaagataaattaaagtca 280  Q
    ||||| ||||||||||| | ||||| ||||||||||  | | |||  || |||||||| |||||||||| ||||||| |||| ||||||||||| ||| |    
T  21043401 tttgggtaaacaacttaatgaagtgcttatagcatagacgcttatcattcaagtgtttgtgtataagttatttctattaacaaaagataaattatagtta 21043302  T
Q  281 aaatgttttcataa 294  Q
    || |||||||||||    
T  21043301 aactgttttcataa 21043288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 51044598 - 51044533
Alignment:
Q  230 ttaagtgtttatgtataagttttttctataacagaagataaattaaagtcaaa-atgttttcataa 294  Q
    ||||||||||||||||||| | ||||||||||| |||||||| ||||||||||  |||||||||||    
T  51044598 ttaagtgtttatgtataagctatttctataacaaaagataaaataaagtcaaacttgttttcataa 51044533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 5131363 - 5131309
Alignment:
Q  238 ttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcat 292  Q
    ||||||||||||| ||| ||||||| |||||||| |||||| |||||||||||||    
T  5131363 ttatgtataagttgtttatataacaaaagataaaataaagttaaaatgttttcat 5131309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 44119295 - 44119238
Alignment:
Q  236 gtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    ||||||||||||||| |||||||| || ||||||||  |||||||| |||||||||||    
T  44119295 gtttatgtataagttatttctatagcaaaagataaaacaaagtcaatatgttttcata 44119238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 4191671 - 4191735
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagat-aaattaaagtcaaaatgttttcataa 294  Q
    |||||| ||||||||||| | ||||||||||| ||||| ||| |||||||||| |||||||||||    
T  4191671 taagtgcttatgtataagctatttctataacaaaagataaaaataaagtcaaactgttttcataa 4191735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 290
Target Start/End: Complemental strand, 4798698 - 4798638
Alignment:
Q  230 ttaagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttc 290  Q
    ||||||| ||||||||||| | |||||||| || |||||||| ||||||| ||||||||||    
T  4798698 ttaagtgcttatgtataagctatttctatatcaaaagataaaataaagtctaaatgttttc 4798638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 29374018 - 29373963
Alignment:
Q  238 ttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    |||| |||||| | |||||||||||||||||||| ||| |||||||||| ||||||    
T  29374018 ttatatataagctatttctataacagaagataaaataatgtcaaaatgtattcata 29373963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 271
Target Start/End: Complemental strand, 40709565 - 40709478
Alignment:
Q  184 tggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaa 271  Q
    ||||||||||||||| ||||||| ||||| ||||| | | || | | |||||| |||| |||||| | ||||||||||| ||||||||    
T  40709565 tggataaacaacttaattaagtgcttatatcataaccacttaatatataagtgcttatttataagctgtttctataacaaaagataaa 40709478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 297
Target Start/End: Complemental strand, 52294105 - 52294038
Alignment:
Q  231 taagtgtttatgtataagtt-ttttctataacagaagataaattaaagtcaaaatgttttcataaact 297  Q
    |||||| |||| |||||||| |||||||||||  |||||||| |||||| ||| ||||||||||||||    
T  52294105 taagtgcttatatataagttgttttctataaccaaagataaaataaagtgaaattgttttcataaact 52294038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 250 - 293
Target Start/End: Original strand, 53626727 - 53626770
Alignment:
Q  250 tttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    ||||||||||||| |||||||| |||| ||||||||||||||||    
T  53626727 tttttctataacaaaagataaaataaattcaaaatgttttcata 53626770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 54327576 - 54327525
Alignment:
Q  242 gtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    ||||||||| ||||||||||| ||||||||  ||||||||| ||||||||||    
T  54327576 gtataagttgtttctataacaaaagataaaacaaagtcaaactgttttcata 54327525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 187 - 282
Target Start/End: Original strand, 55599054 - 55599149
Alignment:
Q  187 ataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaagtcaaa 282  Q
    |||||||||||| |||||||  |||||||||||| |||||    ||||||||||| ||||||||  || | ||||| |||| ||| ||||||||||    
T  55599054 ataaacaacttaattaagtgcatatagcataagcgcgtatcacataagtgtttatatataagttacttttgtaacaaaagacaaaataaagtcaaa 55599149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 293
Target Start/End: Complemental strand, 22684702 - 22684592
Alignment:
Q  183 ttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaagtcaaa 282  Q
    |||||||||||||||| |||| || ||||| |||| || | |||  | ||| || || |||||||| | ||||||||||| | | |||| ||||||||||    
T  22684702 ttggataaacaacttaattaattgcttataccatatgcgcttatcatataaatgcttctgtataagctatttctataacaaacggtaaaataaagtcaaa 22684603  T
Q  283 atgttttcata 293  Q
     ||||||||||    
T  22684602 ttgttttcata 22684592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 42322017 - 42321955
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    |||||||||||| ||||| | ||| ||||||| | |||||| |||||||||| ||||||||||    
T  42322017 taagtgtttatgaataagctatttttataacaaatgataaaataaagtcaaattgttttcata 42321955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 293
Target Start/End: Original strand, 49219035 - 49219133
Alignment:
Q  195 cttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    |||||||||||| |||||||||  || | |||  | | |||| ||| ||||||||| ||||||||||| || ||||| |||||||||| | ||||||||    
T  49219035 cttagttaagtgcttatagcattggcgcttatcatatgagtggttaggtataagttatttctataacaaaatataaaataaagtcaaattattttcata 49219133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 294
Target Start/End: Original strand, 2431535 - 2431592
Alignment:
Q  237 tttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcataa 294  Q
    ||||||||||||||  || ||| ||| |||||||| | ||||||||||||||||||||    
T  2431535 tttatgtataagttagttttattacaaaagataaagttaagtcaaaatgttttcataa 2431592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 19422357 - 19422401
Alignment:
Q  238 ttatgtataagttttttctataacagaagataaattaaagtcaaa 282  Q
    ||||||||||||| ||||||||||| |||||| | ||||||||||    
T  19422357 ttatgtataagttatttctataacaaaagatataataaagtcaaa 19422401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 292
Target Start/End: Original strand, 23815311 - 23815363
Alignment:
Q  240 atgtataagttttttctataacagaagataaattaaagtcaaaatgttttcat 292  Q
    |||| |||||| ||||||||||| |||||||| ||| |||||| |||||||||    
T  23815311 atgtttaagttatttctataacaaaagataaaataatgtcaaactgttttcat 23815363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 47970250 - 47970310
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttca 291  Q
    |||||| ||||||||||| | ||||||||||| |||||||| | |||||||| | ||||||    
T  47970250 taagtgcttatgtataagctatttctataacaaaagataaaatgaagtcaaactattttca 47970310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 293
Target Start/End: Original strand, 4558678 - 4558792
Alignment:
Q  179 ttgtttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaagt 278  Q
    |||||||||||||||||||| ||| | | ||||||||||| |   |||| | |||||||||||||||||| | ||||||||| | |||||||| ||||||    
T  4558678 ttgtttggataaacaacttaattacgcgcttatagcataaacgtttattatgtaagtgtttatgtataagctatttctataataaaagataaaataaagt 4558777  T
Q  279 caaaatgttttcata 293  Q
     ||| | ||||||||    
T  4558778 taaattattttcata 4558792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 182 - 292
Target Start/End: Original strand, 29699137 - 29699247
Alignment:
Q  182 tttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaagtcaa 281  Q
    ||||||||||| ||||||||||||| |||||||||||     |||  | ||| || ||||||| ||||| ||||||||||| |||||||| |||||||||    
T  29699137 tttggataaacgacttagttaagtgcttatagcataaatatttatcatataaatgcttatgtacaagttatttctataacaaaagataaaataaagtcaa 29699236  T
Q  282 aatgttttcat 292  Q
    |||||| ||||    
T  29699237 aatgttgtcat 29699247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 282
Target Start/End: Complemental strand, 11119193 - 11119086
Alignment:
Q  175 ggttttgtttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaatta 274  Q
    |||||||||||||||||||||||  |||||||||||||||||||   | |||  | |||  | ||||||||| | | ||||||||||| |||||||| ||    
T  11119193 ggttttgtttggataaacaacttgattaagtgtttatagcataactacatatcatataatcgcttatgtatacgatatttctataacaaaagataaaata 11119094  T
Q  275 aagtcaaa 282  Q
    ||||||||    
T  11119093 aagtcaaa 11119086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 9928188 - 9928232
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaa 275  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||    
T  9928188 taagtgtttatgtataagttatttctataacaaaagataaattaa 9928232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 40728556 - 40728498
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgtttt 289  Q
    |||||||| ||| ||||||| ||||||||||| |||||||| |||||||||| ||||||    
T  40728556 taagtgttcatgcataagttatttctataacaaaagataaaataaagtcaaactgtttt 40728498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 289
Target Start/End: Original strand, 14482083 - 14482192
Alignment:
Q  180 tgtttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaagtc 279  Q
    |||||| |||||||| ||| ||||||  ||||||||| ||  | |||  | |||||| ||||||||||  | ||||||||||| |||||||| |||||||    
T  14482083 tgtttgaataaacaatttaattaagttcttatagcattagtgcttatcatataagtgcttatgtataaactatttctataacaaaagataaaataaagtc 14482182  T
Q  280 aaaatgtttt 289  Q
    ||| ||||||    
T  14482183 aaattgtttt 14482192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 26055966 - 26056057
Alignment:
Q  180 tgtttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaa 271  Q
    ||||||||| ||||||||| ||| | | ||||||||||||||  | | || |||||||||||||||||| |  ||||| |||| ||||||||    
T  26055966 tgtttggatcaacaacttaattacgcgcttatagcataagcttttttattataagtgtttatgtataagctaattctaaaacaaaagataaa 26056057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 268
Target Start/End: Original strand, 12972739 - 12972825
Alignment:
Q  182 tttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagat 268  Q
    |||||| |||||||||| ||||| | |||||||||||||   |||  | |||||| ||||||||||| | |||| ||||||||||||    
T  12972739 tttggacaaacaacttaattaagcgcttatagcataagcatttatcatataagtgcttatgtataagctatttcaataacagaagat 12972825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 293
Target Start/End: Complemental strand, 41336835 - 41336721
Alignment:
Q  179 ttgtttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaagt 278  Q
    |||||||||||||||||||| |||| || |||||||||||||   |||    ||| || |||||||||| |  ||| ||| ||| |||||||| || |||    
T  41336835 ttgtttggataaacaacttaattaattgcttatagcataagcgtttatcaaataaatgcttatgtataaatcatttttatgacaaaagataaaatatagt 41336736  T
Q  279 caaaatgttttcata 293  Q
    |||| ||||||||||    
T  41336735 caaattgttttcata 41336721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 42597340 - 42597394
Alignment:
Q  238 ttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcat 292  Q
    ||||||||||| | ||||||||||| |||||||| |||||| ||| |||||||||    
T  42597340 ttatgtataagctatttctataacaaaagataaaataaagtaaaattgttttcat 42597394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 7918612 - 7918579
Alignment:
Q  180 tgtttggataaacaacttagttaagtgtttatag 213  Q
    ||||||||||||||||||||||||||| ||||||    
T  7918612 tgtttggataaacaacttagttaagtgattatag 7918579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 276
Target Start/End: Complemental strand, 11188293 - 11188248
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaa 276  Q
    |||||| ||||||||||||| ||||||||||| |||||||| ||||    
T  11188293 taagtgcttatgtataagttgtttctataacaaaagataaaataaa 11188248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 26820142 - 26820182
Alignment:
Q  242 gtataagttttttctataacagaagataaattaaagtcaaa 282  Q
    ||||||||| ||||||||||| |||||||| ||||||||||    
T  26820142 gtataagttatttctataacaaaagataaaataaagtcaaa 26820182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 29592721 - 29592653
Alignment:
Q  180 tgtttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataag 248  Q
    ||||||||||||||||||||||| |  ||||||||||||| || |||  | |||||| || ||||||||    
T  29592721 tgtttggataaacaacttagttatgcatttatagcataagttcttatcatataagtgcttttgtataag 29592653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 32506989 - 32507029
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaa 271  Q
    |||||||||||||||||||| |||||| |||| ||||||||    
T  32506989 taagtgtttatgtataagttatttctacaacaaaagataaa 32507029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 257
Target Start/End: Complemental strand, 30237935 - 30237857
Alignment:
Q  180 tgtttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtg-tttatgtataagttttttcta 257  Q
    ||||||||||||||||||| |||||||| |||||||||||| | |||| | |||||| |||||||||||||| ||||||    
T  30237935 tgtttggataaacaacttaattaagtgtctatagcataagcacttattatataagtgttttatgtataagttatttcta 30237857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 232 - 293
Target Start/End: Original strand, 15360827 - 15360888
Alignment:
Q  232 aagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    |||||||||||||| |||| ||||||||||| |||||||| |||||||||| ||||||||||    
T  15360827 aagtgtttatgtattagttatttctataacaaaagataaaataaagtcaaactgttttcata 15360888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 293
Target Start/End: Complemental strand, 1879144 - 1879103
Alignment:
Q  252 tttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  1879144 tttctataacagaagataaaataaagtcaaaatgttttcata 1879103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 293
Target Start/End: Original strand, 4200130 - 4200223
Alignment:
Q  200 ttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    |||||||  |||||||||||| | |||  | ||||||||||| |||||||| ||| ||||||| |||||||| |||||||||  ||||||||||    
T  4200130 ttaagtgcgtatagcataagcacttatcatctaagtgtttatatataagttatttttataacaaaagataaaataaagtcaagttgttttcata 4200223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 295
Target Start/End: Original strand, 45327538 - 45327603
Alignment:
Q  230 ttaagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcataaa 295  Q
    |||||||| |||||||||| | ||||||||||| ||| ||||||| |||||| |||||||||||||    
T  45327538 ttaagtgtatatgtataagatatttctataacaaaaggtaaattagagtcaatatgttttcataaa 45327603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 49517006 - 49517063
Alignment:
Q  235 tgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcat 292  Q
    ||||| |||||||||| ||||||||||| |||||||| |||||||||| |||||||||    
T  49517006 tgtttgtgtataagttatttctataacaaaagataaaataaagtcaaattgttttcat 49517063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 293
Target Start/End: Complemental strand, 49560748 - 49560635
Alignment:
Q  180 tgtttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaagtc 279  Q
    ||||||||||||||||||| |||||||||||||||||| || |  ||  | |||||| |||| |||||  | ||| ||||||| ||||||||  ||| ||    
T  49560748 tgtttggataaacaacttacttaagtgtttatagcatatgcactaatcatataagtgcttatatataatatatttatataacaaaagataaaccaaattc 49560649  T
Q  280 aaaatgttttcata 293  Q
    ||| ||||||||||    
T  49560648 aaattgttttcata 49560635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 21 - 141
Target Start/End: Original strand, 30257245 - 30257365
Alignment:
Q  21 ttttgtaaaaagtatagtattgaaccaagggcacctgagtattactttaatgagaagattgattacttgaaagataaggttgagcctacttttgtcaagg 120  Q
    ||||||||||||||||| ||||| ||||||||||||||||  || |||  | ||||  |||||||||||||||| |||||  | || || ||||| ||||    
T  30257245 ttttgtaaaaagtatagcattgagccaagggcacctgagtcctatttttctcagaaagttgattacttgaaagacaaggtacatccaacatttgtaaagg 30257344  T
Q  121 aaagaaggtctatgaaggtaa 141  Q
    |  | ||| ||||||||||||    
T  30257345 atcgcagggctatgaaggtaa 30257365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 44032137 - 44032075
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    ||||||||||||||||||   ||||||||||| ||| |||| |||||||||| ||||||||||    
T  44032137 taagtgtttatgtataagccgtttctataacaaaagctaaaataaagtcaaattgttttcata 44032075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 4338587 - 4338640
Alignment:
Q  237 tttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttc 290  Q
    |||||||||||||| | |||| ||||||||||||| |||||||||| |||||||    
T  4338587 tttatgtataagttatgtctagaacagaagataaaataaagtcaaactgttttc 4338640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 294
Target Start/End: Complemental strand, 14737829 - 14737780
Alignment:
Q  245 taagttttttctataacagaagataaattaaagtcaaaatgttttcataa 294  Q
    |||||| ||||||||||| |||||||| |||||||||| |||||||||||    
T  14737829 taagttatttctataacaaaagataaaataaagtcaaattgttttcataa 14737780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 294
Target Start/End: Original strand, 50319231 - 50319287
Alignment:
Q  238 ttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcataa 294  Q
    ||||||||||| | ||||||||||| |||||||| |||||||||  |||||||||||    
T  50319231 ttatgtataagctatttctataacaaaagataaaataaagtcaagttgttttcataa 50319287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 29007847 - 29007792
Alignment:
Q  238 ttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    |||||| |||||| ||||||||||| |||| |||||||||||||| | ||||||||    
T  29007847 ttatgtctaagttatttctataacaaaagaaaaattaaagtcaaactattttcata 29007792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 38651547 - 38651484
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcataa 294  Q
    |||||| ||||||||||| |  |||||||||| |||||||| ||||||| || |||||||||||    
T  38651547 taagtgcttatgtataagctaattctataacaaaagataaactaaagtcgaattgttttcataa 38651484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 46504397 - 46504315
Alignment:
Q  188 taaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaa 271  Q
    ||||||||||| ||||||||||||||||||||||| |||  | ||||||||| | |||||  | ||| ||||||| ||||||||    
T  46504397 taaacaactta-ttaagtgtttatagcataagctcttatcatataagtgtttgtctataaactatttttataacaaaagataaa 46504315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 17269182 - 17269244
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    |||||| ||||||||||||| |||||| |||| |||  ||| |||||||||| ||||||||||    
T  17269182 taagtgcttatgtataagttatttctagaacaaaagtgaaaataaagtcaaattgttttcata 17269244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 217
Target Start/End: Complemental strand, 29666500 - 29666462
Alignment:
Q  179 ttgtttggataaacaacttagttaagtgtttatagcata 217  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  29666500 ttgtttggataaacaacttacttaagtgcttatagcata 29666462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 293
Target Start/End: Complemental strand, 48830210 - 48830152
Alignment:
Q  235 tgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    |||||||||||||||| ||||||| ||  |||||||| |||||||||| | ||||||||    
T  48830210 tgtttatgtataagttatttctattaccaaagataaaataaagtcaaactattttcata 48830152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 49365977 - 49365939
Alignment:
Q  180 tgtttggataaacaacttagttaagtgtttatagcataa 218  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  49365977 tgtttggataaacaacttagttaagcgcttatagcataa 49365939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 220
Target Start/End: Original strand, 16322722 - 16322763
Alignment:
Q  179 ttgtttggataaacaacttagttaagtgtttatagcataagc 220  Q
    |||||||||||||||||||| ||||||| |||||||| ||||    
T  16322722 ttgtttggataaacaacttaattaagtgcttatagcacaagc 16322763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 36151637 - 36151584
Alignment:
Q  237 tttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttc 290  Q
    |||||||||||| | |||| |||||| |||||||| |||||||||| |||||||    
T  36151637 tttatgtataagctatttcaataacaaaagataaaataaagtcaaattgttttc 36151584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 279
Target Start/End: Complemental strand, 42169673 - 42169632
Alignment:
Q  238 ttatgtataagttttttctataacagaagataaattaaagtc 279  Q
    |||| |||||||| |||||||||||||||||||| |||||||    
T  42169673 ttatctataagttatttctataacagaagataaaataaagtc 42169632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 260
Target Start/End: Original strand, 52190070 - 52190099
Alignment:
Q  231 taagtgtttatgtataagttttttctataa 260  Q
    ||||||||||||||||||||||||||||||    
T  52190070 taagtgtttatgtataagttttttctataa 52190099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 4202267 - 4202207
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttca 291  Q
    |||||| ||| ||||||||| ||||||||||| ||||||||  ||||||||  ||||||||    
T  4202267 taagtgcttaagtataagttatttctataacaaaagataaaccaaagtcaagctgttttca 4202207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 27140417 - 27140457
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaa 271  Q
    ||||||||||||| |||||| ||||||||||| ||||||||    
T  27140417 taagtgtttatgtgtaagttatttctataacaaaagataaa 27140457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 29415900 - 29415856
Alignment:
Q  178 tttgtttggataaacaacttagttaagtgtttatagcataagctc 222  Q
    |||||||||||||||||| || ||||| | |||||||||||||||    
T  29415900 tttgtttggataaacaacataattaagcgcttatagcataagctc 29415856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 293
Target Start/End: Complemental strand, 30815767 - 30815711
Alignment:
Q  237 tttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    ||||||| |||| ||||||||||||| |||||||| |||||| ||| | ||||||||    
T  30815767 tttatgtctaagctttttctataacaaaagataaaataaagttaaactattttcata 30815711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 36641814 - 36641858
Alignment:
Q  238 ttatgtataagttttttctataacagaagataaattaaagtcaaa 282  Q
    |||| |||||||| ||||||||||| |||||||| ||||||||||    
T  36641814 ttatatataagttatttctataacaaaagataaaataaagtcaaa 36641858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 271
Target Start/End: Complemental strand, 37593807 - 37593767
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaa 271  Q
    |||||||||||||||||| | ||||||||||| ||||||||    
T  37593807 taagtgtttatgtataaggtatttctataacacaagataaa 37593767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 180 - 281
Target Start/End: Complemental strand, 20982324 - 20982223
Alignment:
Q  180 tgtttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaagtc 279  Q
    ||||||||||||||||||  ||||||| ||||||||||||  | |||  | |||||| ||||||||||| | ||||||||||| | |||||| |||||||    
T  20982324 tgtttggataaacaacttcattaagtgcttatagcataagtgcttatcatataagtgcttatgtataagctatttctataacaaaggataaaataaagtc 20982225  T
Q  280 aa 281  Q
    ||    
T  20982224 aa 20982223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 276
Target Start/End: Original strand, 26516180 - 26516275
Alignment:
Q  181 gtttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaa 276  Q
    |||||||||||||||||| ||||| | ||||||||||||| | |||  | |||||| ||||||||||| | |||||| |||| |||||||| ||||    
T  26516180 gtttggataaacaacttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtataagctatttctaaaacaaaagataaaataaa 26516275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 35135800 - 35135738
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    |||||||||||||||||| | ||||||||||| |||||||| |||||||||| | ||||||||    
T  35135800 taagtgtttatgtataagatatttctataacaaaagataaaataaagtcaaactattttcata 35135738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 17756867 - 17756803
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcataaa 295  Q
    |||||| |||||||| |||| ||||| |||||||||||||| |||||||||| ||||||| ||||    
T  17756867 taagtgcttatgtatgagttgtttctttaacagaagataaaataaagtcaaattgttttcgtaaa 17756803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 282
Target Start/End: Complemental strand, 39257576 - 39257473
Alignment:
Q  179 ttgtttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaagt 278  Q
    |||||||||||||||||||| ||||| | ||||||||||| ||  |||  | |||||| ||||||||| | | | ||||||||| ||| |||| ||||||    
T  39257576 ttgtttggataaacaacttaattaagcgcttatagcataaactattatcatgtaagtgcttatgtatatgctatctctataacaaaaggtaaaataaagt 39257477  T
Q  279 caaa 282  Q
    ||||    
T  39257476 caaa 39257473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 29117061 - 29117009
Alignment:
Q  238 ttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttc 290  Q
    ||||||||| ||| ||||||||||| |||||||| |||||||||| |||||||    
T  29117061 ttatgtatatgttatttctataacaaaagataaaataaagtcaaactgttttc 29117009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 912787 - 912724
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaa-tgttttcata 293  Q
    |||| ||||||| ||||||| ||||||||||| || ||||| ||||||||||| ||||||||||    
T  912787 taagcgtttatgaataagttatttctataacacaatataaaataaagtcaaaattgttttcata 912724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 278
Target Start/End: Complemental strand, 40048418 - 40048371
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagt 278  Q
    |||||| ||||||||||||| ||||||||||| |||||||| ||||||    
T  40048418 taagtgcttatgtataagttgtttctataacaaaagataaaataaagt 40048371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 7096264 - 7096214
Alignment:
Q  232 aagtgtttatgtataagttttttctataacagaagataaattaaagtcaaa 282  Q
    ||||| ||||||||||| | ||||||||||| |||||||| ||||||||||    
T  7096264 aagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaa 7096214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 21782708 - 21782650
Alignment:
Q  230 ttaagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttt 288  Q
    |||||||||||||| |||| | ||||||||||| ||| |||| |||||||||| |||||    
T  21782708 ttaagtgtttatgtttaagctatttctataacaaaagctaaaataaagtcaaattgttt 21782650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 33961582 - 33961652
Alignment:
Q  178 tttgtttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataag 248  Q
    |||||||||| |||| ||||| |||||||||||||| |||||| | |||  | ||||||||| ||||||||    
T  33961582 tttgtttggagaaacgacttaattaagtgtttatagtataagcacttatcatataagtgtttttgtataag 33961652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 278
Target Start/End: Original strand, 34975259 - 34975357
Alignment:
Q  180 tgtttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaagt 278  Q
    ||||||||| | || |||| |||||||||| ||||||||||   |||| ||| |||| ||||||||||  | ||||||||||| ||||| || ||||||    
T  34975259 tgtttggattatcagcttaattaagtgtttgtagcataagcagttattatttgagtgattatgtataaactatttctataacaaaagatgaaataaagt 34975357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 40097533 - 40097483
Alignment:
Q  239 tatgtataagttttttctataacagaagataaattaaagtcaaaatgtttt 289  Q
    |||||||||||| |||||||||||||||||||| || ||| ||| ||||||    
T  40097533 tatgtataagttatttctataacagaagataaaatagagttaaattgtttt 40097483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 293
Target Start/End: Complemental strand, 583886 - 583849
Alignment:
Q  256 tataacagaagataaattaaagtcaaaatgttttcata 293  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  583886 tataacagaagataaaataaagtcaaactgttttcata 583849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 293
Target Start/End: Original strand, 14295459 - 14295500
Alignment:
Q  252 tttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    ||||||||||| |||||||| |||||||||| ||||||||||    
T  14295459 tttctataacaaaagataaaataaagtcaaactgttttcata 14295500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 293
Target Start/End: Complemental strand, 28586883 - 28586842
Alignment:
Q  252 tttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    ||||||||||| |||||||| |||||||||| ||||||||||    
T  28586883 tttctataacaaaagataaaataaagtcaaactgttttcata 28586842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 10303754 - 10303794
Alignment:
Q  252 tttctataacagaagataaattaaagtcaaaatgttttcat 292  Q
    ||||||||||| |||||||| |||||||||| |||||||||    
T  10303754 tttctataacaaaagataaaataaagtcaaattgttttcat 10303794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 27153493 - 27153457
Alignment:
Q  233 agtgtttatgtataagttttttctataacagaagata 269  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  27153493 agtgcttatgtataagttttttctatgacagaagata 27153457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 282
Target Start/End: Original strand, 31208404 - 31208456
Alignment:
Q  230 ttaagtgtttatgtataagttttttctataacagaagataaattaaagtcaaa 282  Q
    ||||||| ||||| ||||||| ||||||||||| || ||||||||| ||||||    
T  31208404 ttaagtgcttatgcataagttatttctataacaaaatataaattaacgtcaaa 31208456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 38033900 - 38033940
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaa 271  Q
    |||||||||||||||||||| ||| ||||||| ||||||||    
T  38033900 taagtgtttatgtataagttatttatataacaaaagataaa 38033940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 271
Target Start/End: Original strand, 28844371 - 28844458
Alignment:
Q  184 tggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaa 271  Q
    |||||| |||||||| ||||||||||||||||||||| | |||| | |||||| ||||||||||| | |||| |||| | ||||||||    
T  28844371 tggatatacaacttaattaagtgtttatagcataagcgcttattgtataagtgcttatgtataagatatttcgataaaaaaagataaa 28844458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 289
Target Start/End: Original strand, 2223030 - 2223138
Alignment:
Q  180 tgtttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaagtc 279  Q
    ||||||||||||||| ||| ||| |  ||||||||||||  || |||  | |||||||||||||||||| | ||||||||||| ||||||||  ||||||    
T  2223030 tgtttggataaacaatttaattaggcatttatagcataaa-tcttatcgtataagtgtttatgtataagctatttctataacaaaagataaagaaaagtc 2223128  T
Q  280 aaaatgtttt 289  Q
    ||| ||||||    
T  2223129 aaattgtttt 2223138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 753398 - 753355
Alignment:
Q  175 ggttttgtttggataaacaacttagttaagtgtttatagcataa 218  Q
    |||| ||||||||||||||||||| |||||||||||||||||||    
T  753398 ggttctgtttggataaacaacttaattaagtgtttatagcataa 753355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 293
Target Start/End: Original strand, 35536046 - 35536101
Alignment:
Q  238 ttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    ||||||||||| | ||||||||||| |||||||| |||||||||| ||||||||||    
T  35536046 ttatgtataagctatttctataacataagataaaataaagtcaaattgttttcata 35536101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 504111 - 504181
Alignment:
Q  178 tttgtttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataag 248  Q
    |||||||||||||| |  ||| ||||||| ||||||||||||||| ||||||  ||| |||||||||||||    
T  504111 tttgtttggataaatagtttaattaagtgcttatagcataagctcctattttacaagcgtttatgtataag 504181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 271
Target Start/End: Complemental strand, 22388092 - 22388002
Alignment:
Q  181 gtttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaa 271  Q
    |||||||||||||||||| ||||| | ||||| ||||| | | |||  |||||||| ||||| ||||| | ||||||||||| ||||||||    
T  22388092 gtttggataaacaacttaattaagcgcttataacataaacacttatcatttaagtgcttatggataagctatttctataacaaaagataaa 22388002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 28165023 - 28165081
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgtttt 289  Q
    |||||| ||||||||||||| ||||||||||| |||||||| | |||||||| ||||||    
T  28165023 taagtgcttatgtataagttctttctataacaaaagataaaatgaagtcaaattgtttt 28165081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 282
Target Start/End: Original strand, 31341075 - 31341177
Alignment:
Q  180 tgtttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaagtc 279  Q
    ||||||||||||||||||| | ||| | |||| |||||||| | |||  | ||| || ||||||||||| | ||| ||||||| |||||||| |||||||    
T  31341075 tgtttggataaacaacttaatcaagcgcttattgcataagcgcttatcatctaaatgcttatgtataagctatttgtataacaaaagataaaataaagtc 31341174  T
Q  280 aaa 282  Q
    |||    
T  31341175 aaa 31341177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 293
Target Start/End: Complemental strand, 39591593 - 39591543
Alignment:
Q  243 tataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    |||||||| ||||||||||| |||||||| |||||||||| ||||||||||    
T  39591593 tataagttatttctataacaaaagataaaataaagtcaaattgttttcata 39591543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 297
Target Start/End: Complemental strand, 44239093 - 44239052
Alignment:
Q  256 tataacagaagataaattaaagtcaaaatgttttcataaact 297  Q
    ||||||| |||||||| |||||||||||||||||||||||||    
T  44239093 tataacaaaagataaaataaagtcaaaatgttttcataaact 44239052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 2894749 - 2894809
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttca 291  Q
    |||||||| ||||||||| | ||||||||||| |||||||||||||||  || ||||||||    
T  2894749 taagtgttcatgtataagctatttctataacaaaagataaattaaagttgaactgttttca 2894809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 23918891 - 23918951
Alignment:
Q  233 agtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    ||||||||||| |||||| | ||||| ||| |||||||| |||||||||| ||||||||||    
T  23918891 agtgtttatgtgtaagttatctctattacaaaagataaaataaagtcaaattgttttcata 23918951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 279
Target Start/End: Complemental strand, 46223210 - 46223162
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtc 279  Q
    |||||||||||||||||| | |||| |||||| ||||||||||||||||    
T  46223210 taagtgtttatgtataagctatttccataacaaaagataaattaaagtc 46223162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 294
Target Start/End: Original strand, 7244634 - 7244697
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcataa 294  Q
    |||||| ||||||||||| | |||||||| || ||||||||  ||||||||| |||||||||||    
T  7244634 taagtgcttatgtataagctatttctatatcaaaagataaaagaaagtcaaactgttttcataa 7244697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 30496636 - 30496695
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttc 290  Q
    |||||||||||||||||  | ||||||||||| || ||||| |||||||||| |||||||    
T  30496636 taagtgtttatgtataaactatttctataacaaaatataaaataaagtcaaattgttttc 30496695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 992002 - 992064
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    |||||| ||| ||||||||| ||||||||||| || ||||| ||||| |||||| ||||||||    
T  992002 taagtgcttacgtataagttgtttctataacaaaaaataaaataaagacaaaatattttcata 992064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 33894555 - 33894616
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    |||||| ||||||||||| | ||||||||||| |||||||| | |||||||| ||||||||||    
T  33894555 taagtgcttatgtataagctatttctataacaaaagataaaat-aagtcaaactgttttcata 33894616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 282
Target Start/End: Complemental strand, 35809041 - 35808991
Alignment:
Q  232 aagtgtttatgtataagttttttctataacagaagataaattaaagtcaaa 282  Q
    ||||||||||||||||| | ||||||||||| |||||||| || |||||||    
T  35809041 aagtgtttatgtataagctatttctataacaaaagataaaatatagtcaaa 35808991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 293
Target Start/End: Original strand, 1417201 - 1417258
Alignment:
Q  236 gtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    ||||||||||||  | ||| ||||||| |||||||| |||||||||| ||||||||||    
T  1417201 gtttatgtataaactatttatataacaaaagataaaataaagtcaaattgttttcata 1417258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 1418372 - 1418425
Alignment:
Q  240 atgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    |||||||| || ||||||||||| |||||| | ||||||||| |||||||||||    
T  1418372 atgtataatttatttctataacaaaagatataataaagtcaatatgttttcata 1418425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 9872808 - 9872861
Alignment:
Q  236 gtttatgtataagttttttctataacagaagataaattaaagtcaaaatgtttt 289  Q
    ||||||||||| ||| ||||||||||| || ||||| |||||||||| ||||||    
T  9872808 gtttatgtatatgttgtttctataacaaaatataaaataaagtcaaactgtttt 9872861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 28178910 - 28178963
Alignment:
Q  240 atgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    ||||||||| | ||||||||||| |||||||| |||||||| | ||||||||||    
T  28178910 atgtataagctatttctataacaaaagataaaataaagtcatattgttttcata 28178963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 282
Target Start/End: Original strand, 5938971 - 5939067
Alignment:
Q  186 gataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaagtcaaa 282  Q
    ||||||||||||| ||||| | |||| ||| ||||   ||||   |||||||||||||||||||| ||| ||||||| || || || ||||||||||    
T  5938971 gataaacaacttaattaagcgcttattgcagaagcgattattacataagtgtttatgtataagttatttttataacaaaaaattaaataaagtcaaa 5939067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 28692003 - 28691971
Alignment:
Q  180 tgtttggataaacaacttagttaagtgtttata 212  Q
    ||||||||||||||||||| |||||||||||||    
T  28692003 tgtttggataaacaacttaattaagtgtttata 28691971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 184 - 282
Target Start/End: Complemental strand, 1259 - 1161
Alignment:
Q  184 tggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaagtcaaa 282  Q
    ||||||||||||||| ||||||  ||||||||||| |   |||  | |||||| ||||||||||| | ||||||||||| |||||||| ||||||||||    
T  1259 tggataaacaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaa 1161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 184 - 282
Target Start/End: Original strand, 2716 - 2814
Alignment:
Q  184 tggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaagtcaaa 282  Q
    ||||||||||||||| ||||||  ||||||||||| |   |||  | |||||| ||||||||||| | ||||||||||| |||||||| ||||||||||    
T  2716 tggataaacaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagtcaaa 2814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 184 - 293
Target Start/End: Complemental strand, 33965677 - 33965567
Alignment:
Q  184 tggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagtt-ttttctataacagaagataaattaaagtcaaa 282  Q
    |||||||||| |||| ||||| | ||||||||||| | |||||| | || |||||| |||| ||||| |||| ||||||| ||| |||| ||||||||||    
T  33965677 tggataaacagcttaattaagcgcttatagcataaacacgtattgtataggtgtttttgtacaagttattttttataacaaaaggtaaaataaagtcaaa 33965578  T
Q  283 atgttttcata 293  Q
     ||||||||||    
T  33965577 ctgttttcata 33965567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 229 - 293
Target Start/End: Complemental strand, 3182502 - 3182438
Alignment:
Q  229 tttaagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    ||||||||||||||||||||||  |||||||  | |||||||| |||||||||| ||||||||||    
T  3182502 tttaagtgtttatgtataagttacttctatagaaaaagataaaataaagtcaaattgttttcata 3182438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 24605155 - 24605103
Alignment:
Q  230 ttaagtgtttatgtataagttttttctataacagaagataaattaaagtcaaa 282  Q
    ||||||||||||||||||||| ||||||||||| ||||| || ||||||||||    
T  24605155 ttaagtgtttatgtataagttatttctataacaaaagatgaaataaagtcaaa 24605103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 2201005 - 2201071
Alignment:
Q  180 tgtttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtata 246  Q
    |||| ||||||||||||||  |||| | |||||||||||| || |||| ||||||||||||||||||    
T  2201005 tgttaggataaacaacttaactaagcgcttatagcataaggtcttattatttaagtgtttatgtata 2201071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 38462213 - 38462275
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    ||||||||||| |||||| | |||||||| || |||||||| |||||||||| ||||||||||    
T  38462213 taagtgtttatttataagctatttctataccaaaagataaaataaagtcaaactgttttcata 38462275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 48365010 - 48364956
Alignment:
Q  238 ttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcat 292  Q
    ||||||||||||| |||| |||||| |||||||| |||||||||| |||||||||    
T  48365010 ttatgtataagttatttcgataacaaaagataaaataaagtcaaattgttttcat 48364956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 24235858 - 24235817
Alignment:
Q  179 ttgtttggataaacaacttagttaagtgtttatagcataagc 220  Q
    |||||||||||||||||||| ||||||||||||| |||||||    
T  24235858 ttgtttggataaacaacttaattaagtgtttataacataagc 24235817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 40122883 - 40122826
Alignment:
Q  238 ttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcataaa 295  Q
    ||||||||||| | |||| |||||| |||||||| |||||||||| ||||||||||||    
T  40122883 ttatgtataagctatttcaataacaaaagataaaataaagtcaaactgttttcataaa 40122826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 37308254 - 37308214
Alignment:
Q  180 tgtttggataaacaacttagttaagtgtttatagcataagc 220  Q
    ||||||||||||||||||| ||||||| |||||||||||||    
T  37308254 tgtttggataaacaacttaattaagtgcttatagcataagc 37308214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 271
Target Start/End: Complemental strand, 43116618 - 43116526
Alignment:
Q  179 ttgtttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaa 271  Q
    |||||||||||||||||||| || ||||||||||||||||     |||  |  |||||||||||| |||| | ||||||||||| ||||||||    
T  43116618 ttgtttggataaacaacttaatttagtgtttatagcataaatgtttatcatacaagtgtttatgtgtaagctatttctataacaaaagataaa 43116526  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 8007826 - 8007771
Alignment:
Q  238 ttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    ||||||||||| | ||||||||||| |||||||| |||||||||| |||| |||||    
T  8007826 ttatgtataagctgtttctataacaaaagataaagtaaagtcaaactgttatcata 8007771  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 230 - 293
Target Start/End: Complemental strand, 20192745 - 20192682
Alignment:
Q  230 ttaagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    ||||||| ||||||||||| | ||| ||||||| |||||||| ||||||||||  |||||||||    
T  20192745 ttaagtgcttatgtataagctatttatataacaaaagataaaataaagtcaaacagttttcata 20192682  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 27294237 - 27294328
Alignment:
Q  180 tgtttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaa 271  Q
    |||||||||||||| |||| ||||  |||||||| |||||| | ||   | |||||| ||||| |||||||| |||||||||| ||||||||    
T  27294237 tgtttggataaacagcttaattaaccgtttatagtataagcacttaacgtataagtgcttatgcataagtttcttctataacaaaagataaa 27294328  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 293
Target Start/End: Original strand, 1395611 - 1395665
Alignment:
Q  239 tatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    |||||||||| | ||||||||||| |||||||| |||||||||| | ||||||||    
T  1395611 tatgtataagctatttctataacaaaagataaaataaagtcaaattattttcata 1395665  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 2128389 - 2128331
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgtttt 289  Q
    |||| ||||||||||||| | ||||||||||| |||||||| |||||| ||| ||||||    
T  2128389 taagcgtttatgtataagctatttctataacaaaagataaaataaagttaaattgtttt 2128331  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 297
Target Start/End: Complemental strand, 28283715 - 28283649
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcataaact 297  Q
    |||||| ||||| |||||||  |||||||||| |||||||||  |||||||| | ||||||||||||    
T  28283715 taagtgcttatgcataagttacttctataacaaaagataaatgtaagtcaaactattttcataaact 28283649  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 44374782 - 44374720
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    |||||| ||||||||||| | | ||| ||||| |||||||| |||||||||| ||||||||||    
T  44374782 taagtgcttatgtataagctatatctttaacaaaagataaaataaagtcaaattgttttcata 44374720  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 293
Target Start/End: Complemental strand, 49587042 - 49586992
Alignment:
Q  243 tataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    |||||| | ||||||||||| |||||||| |||||||||| ||||||||||    
T  49587042 tataagctatttctataacaaaagataaaataaagtcaaactgttttcata 49586992  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 10101601 - 10101552
Alignment:
Q  244 ataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    ||||||| ||||||||||| |||||||| |||||| ||| ||||||||||    
T  10101601 ataagttatttctataacaaaagataaaataaagttaaattgttttcata 10101552  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 10212526 - 10212477
Alignment:
Q  244 ataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    ||||||| ||||||||||| |||||||| |||||| ||| ||||||||||    
T  10212526 ataagttatttctataacaaaagataaaataaagttaaattgttttcata 10212477  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 293
Target Start/End: Complemental strand, 22214870 - 22214757
Alignment:
Q  180 tgtttggataaacaacttagttaagtgtttatagcataagctcgtattttttaagtgtttatgtataagttttttctataacagaagataaattaaagtc 279  Q
    |||||||||||| ||| || |||| ||||||| ||| |||| | |||  | ||||||  ||||||||| || ||||||||||| | |||||| ||||||     
T  22214870 tgtttggataaagaacgtaattaattgtttatcgcacaagcacttatcgtataagtgcgtatgtataaattatttctataacaaaggataaaataaagtg 22214771  T
Q  280 aaaatgttttcata 293  Q
    ||| ||| ||||||    
T  22214770 aaattgtattcata 22214757  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 294
Target Start/End: Original strand, 53457307 - 53457372
Alignment:
Q  229 tttaagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcataa 294  Q
    |||||||||||| ||||||| |  ||| |||||| |||||||| |||||||||| | |||||||||    
T  53457307 tttaagtgtttacgtataagctacttcgataacaaaagataaaataaagtcaaactattttcataa 53457372  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 12985459 - 12985398
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcataa 294  Q
    |||||||||||||||||||| ||||||||||  || ||||| |||||  ||| |||||||||||    
T  12985459 taagtgtttatgtataagttgtttctataac--aaaataaaataaagataaactgttttcataa 12985398  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 41028989 - 41028929
Alignment:
Q  231 taagtgtttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttca 291  Q
    |||||| ||||||||||| | ||||||||||| |||| ||| |||||||||  ||||||||    
T  41028989 taagtgcttatgtataagctatttctataacaaaagaaaaaataaagtcaatctgttttca 41028929  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 289
Target Start/End: Original strand, 48397525 - 48397636
Alignment:
Q  180 tgtttggataaacaacttagttaagtgtttatagcataagctcgtatt--ttttaagtgtttatgtataagttttttctataacagaagataaattaaag 277  Q
    ||||| |||||||| |||| ||||| |||  |||||||||| | |||   || |||||||  ||||||||||| ||| ||||| | |||||||| |||||    
T  48397525 tgtttagataaacagcttaattaagcgttggtagcataagcccttataacttataagtgtaaatgtataagttatttttataataaaagataaaataaag 48397624  T
Q  278 tcaaaatgtttt 289  Q
    ||||| ||||||    
T  48397625 tcaaattgtttt 48397636  T

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Target: scaffold0508 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 9906 - 9851
Alignment:
Q  238 ttatgtataagttttttctataacagaagataaattaaagtcaaaatgttttcata 293  Q
    ||||||||||||| ||||||||||| || ||||| | ||||||||| |||||||||    
T  9906 ttatgtataagttatttctataacaaaaaataaaattaagtcaaaaagttttcata 9851  T

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