View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4164_high_12 (Length: 226)
Name: NF4164_high_12
Description: NF4164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4164_high_12 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 5 - 226
Target Start/End: Original strand, 7984902 - 7985123
Alignment:
| Q |
5 |
catcaacaattcatcatgaaaacaaaccaaaaacaataacaacatataattccaaagttcaaataatgaataaactgaagaattaaactatgcattgttc |
104 |
Q |
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| T |
7984902 |
catcaacaattcatcgtgaaaacaaaccaaaaacaataacaacatataattccaaagttcaaataatgaataaactgaagaattaaactatgcattgctc |
7985001 |
T |
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| Q |
105 |
ttcttcctctaagaacaatgagtagagttggtaagaaggcaagttctacggtgaaccacctagtccctcatgaactaataactgaaaattgccagaaaca |
204 |
Q |
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| T |
7985002 |
ttcttcctctaaaaacaatgagtagagttggtaagaaggcaagttctacggtgaaccacctagtccctcatgaactaataactgaaaattgccagaaaca |
7985101 |
T |
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| Q |
205 |
ccagagacactaaaatgatgga |
226 |
Q |
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| T |
7985102 |
ccagagacaataaaatgatgga |
7985123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 7984636 - 7984730
Alignment:
| Q |
15 |
tcatcatgaaaacaaaccaaaaacaataacaacatataattccaaagttcaaataatgaataaactgaagaattaaactatgcattgttcttcttc |
110 |
Q |
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| T |
7984636 |
tcatcatgaaaacagactaaaa-caacaacaaaatgtaattcgaaagttcaaaaaatgaataaactgaaaatttaaactatgcaatgttcttcttc |
7984730 |
T |
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