View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4164_low_1 (Length: 549)

Name: NF4164_low_1
Description: NF4164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4164_low_1
NF4164_low_1
[»] chr2 (16 HSPs)
chr2 (13-533)||(5815373-5815895)
chr2 (14-165)||(5828021-5828171)
chr2 (13-211)||(5777761-5777951)
chr2 (226-358)||(5815228-5815361)
chr2 (10-211)||(5772134-5772327)
chr2 (48-157)||(5795475-5795584)
chr2 (228-360)||(5795615-5795749)
chr2 (13-96)||(5797870-5797953)
chr2 (122-211)||(5777481-5777562)
chr2 (122-211)||(5793091-5793172)
chr2 (313-360)||(5797813-5797860)
chr2 (316-360)||(5828175-5828219)
chr2 (313-360)||(5772334-5772380)
chr2 (177-211)||(5827952-5827986)
chr2 (174-211)||(5793378-5793415)
chr2 (174-211)||(5795367-5795404)


Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 13 - 533
Target Start/End: Original strand, 5815373 - 5815895
Alignment:
Q  13 catcactagttttcttttaatactttgttagtcacactttgttaatacctcgttaatgaagttcattcttttcactacttttttctatgaacgtgactga 112  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5815373 catcactagttttcttttaatactttgttagtcacacttttttagtacctcgttaatgaagttcattcttttcactacttttttctatgaacgtgactga 5815472  T
Q  113 acatgtaagcacatgttagtaacttctatttttagtgcaacttaagatagaagagtaagtatataacagcaatgtatgcatacaagaaatactttataag 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  5815473 acatgtaagcacatgttagtaacttctatttttagtgcaacttaagatagaagtataagtatataacagcaatgtatgcatacaagaaatactttataag 5815572  T
Q  213 aaaacaagtgtatatttatctttgaggtaatatgcactgtcttagaccatttttcatagtgactcaatattgccta-ttgctttgtacatttaaagatat 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5815573 aaaacaagtgtatatttatctttgaggtaatatgcactgtcttagaccatttttcatagtgactcaatattgcctatttgctttgtacatttaaagatat 5815672  T
Q  312 atacattctttcataatacgtcacactttgttagtgggttgcaatgtcactag-atacaatgccgaatcctatcgtgaatatgtcctttcccacctctcc 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  5815673 atacattctttcataatacgtcacactttgttagtgggttgcaatgtcactagaatacaatgccgaatcctatcgtgaatatgtcctttcccccctctcc 5815772  T
Q  411 accatcatcaccaccacctctggcttcaccactgccttctcatcacaatcatccatatctcatgattttcatatgatcaattttacttggactggcagcc 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5815773 accatcatcaccaccacctctggcttcaccactgccttctcatcacaatcatccacatctcatgattttcatatgatcaattttacttggactggcagcc 5815872  T
Q  511 ttcgtcttttttgccatatactt 533  Q
    ||||||||| ||| |||||||||    
T  5815873 ttcgtctttattggcatatactt 5815895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 14 - 165
Target Start/End: Complemental strand, 5828171 - 5828021
Alignment:
Q  14 atcactagttttcttttaatactttgttagtcacactttgttaatacctcgttaatgaagttcattcttttcactacttttttctatgaacgtgactgaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||| ||| ||||  ||| |||||| || ||||||||||||| ||||| |||    
T  5828171 atcactagttttcttttaatactttgttagtcacactttgtaagtacctcgt-aataaagtcaatttttttcaatatttttttctatgaaagtgaccgaa 5828073  T
Q  114 catgtaagcacatgttagtaacttctatttttagtgcaacttaagatagaag 165  Q
    ||||||||||||||||||||| |||||||||||||| |||| ||||||||||    
T  5828072 catgtaagcacatgttagtaatttctatttttagtgtaactaaagatagaag 5828021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 5777951 - 5777761
Alignment:
Q  13 catcactagttttcttttaatactttgttagtcacactttgttaatacctcgttaatgaagttcattcttttcactacttttttctatgaacgtgactga 112  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||  | ||||||||| | |||| |||||| |||||||||||||||| ||||| ||    
T  5777951 catcactagttttcttttaatattttgttagtcacactttgttagtatttagttaatgaaatccatttttttcaatacttttttctatgaaagtgaccga 5777852  T
Q  113 acatgtaagcacatgttagtaacttctatttttagtgcaacttaagatagaagagtaagtatataacagcaatgtatgcatacaagaaatactttataa 211  Q
    ||||||||||| |||||||||| || ||||||||||| ||||||||||| ||        |||||| | ||| |||||||||||| |||||||||||||    
T  5777851 acatgtaagcatatgttagtaatttttatttttagtgtaacttaagatacaa--------atataaaaacaacgtatgcatacaaaaaatactttataa 5777761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 226 - 358
Target Start/End: Original strand, 5815228 - 5815361
Alignment:
Q  226 atttatctttgaggtaatatgcactgtctt-agaccatttttcatagtgactcaatattgcctattgctttgtacatttaaagatatatacattctttca 324  Q
    ||||||||||||||||||||| || ||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  5815228 atttatctttgaggtaatatgtaccgtctttacaccatttttcatagtgactcaatattgcttattgctttgtacatttaaagaaatacacattctttca 5815327  T
Q  325 taatacgtcacactttgttagtgggttgcaatgt 358  Q
    ||||| |||||||||| |||| ||||||||||||    
T  5815328 taataagtcacactttattagagggttgcaatgt 5815361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 5772327 - 5772134
Alignment:
Q  10 catcatcactagttttcttttaatactttgttagtcacactttgttaatacctcgttaatgaagttcattcttttcactacttttttctatgaacgtgac 109  Q
    |||||| |||| ||||||||||||| ||||||||||||||||||||| ||  | ||||||||||| ||||||||||| ||||||| ||||| ||  |||     
T  5772327 catcattactaattttcttttaatattttgttagtcacactttgttagtatttagttaatgaagtccattcttttcaatacttttctctataaaaatgat 5772228  T
Q  110 tgaacatgtaagcacatgttagtaacttctatttttagtgcaacttaagatagaagagtaagtatataacagcaatgtatgcatacaagaaatactttat 209  Q
     |||||| ||||||||| ||||||| || ||||||||||| |||||||||||||||        ||||||||||| |||||||||||| |||||||||||    
T  5772227 cgaacatataagcacatattagtaatttttatttttagtgtaacttaagatagaag--------tataacagcaacgtatgcatacaaaaaatactttat 5772136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 5795584 - 5795475
Alignment:
Q  48 actttgttaatacctcgttaatgaagttcattcttttcactacttttttctatgaacgtgactgaacatgtaagcacatgttagtaacttctatttttag 147  Q
    ||||||||| ||||||  ||||||||  ||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||| || |||||||||    
T  5795584 actttgttagtacctcaataatgaagcccattcttttcaatacttttttctaagaacgtgaccgaacatgtaagcacatgttagtaatttttatttttag 5795485  T
Q  148 tgcaacttaa 157  Q
    || |||||||    
T  5795484 tgtaacttaa 5795475  T

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Target: chr2; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 228 - 360
Target Start/End: Complemental strand, 5795749 - 5795615
Alignment:
Q  228 ttatctttgaggtaatatgcactgtctt-agaccatttttcatagtgactcaatattgcctattgctttgtacattt-aaagatatatacattctttcat 325  Q
    |||| |||||||||| |||||||||||| | ||| |||| ||||||||||||||||| | ||||||||||||||||| |||||| |||| |||||||  |    
T  5795749 ttatttttgaggtaacatgcactgtctttaaaccgttttccatagtgactcaatattacttattgctttgtacatttaaaagatttatagattcttttgt 5795650  T
Q  326 aatacgtcacactttgttagtgggttgcaatgtca 360  Q
    |||| ||||||||||||||| |||||| |||||||    
T  5795649 aataagtcacactttgttagggggttgtaatgtca 5795615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 5797870 - 5797953
Alignment:
Q  13 catcactagttttcttttaatactttgttagtcacactttgttaatacctcgttaatgaagttcattcttttcactactttttt 96  Q
    |||||||| ||||||||||||||||||||||| ||||||||||| ||||||| ||||||| | ||||||||| | |||||||||    
T  5797870 catcactaattttcttttaatactttgttagttacactttgttagtacctcgataatgaaatccattctttttaatactttttt 5797953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 122 - 211
Target Start/End: Complemental strand, 5777562 - 5777481
Alignment:
Q  122 cacatgttagtaacttctatttttagtgcaacttaagatagaagagtaagtatataacagcaatgtatgcatacaagaaatactttataa 211  Q
    ||||||||||||| |||||||||||||| |||||||||||||||        ||||||| ||||| || |||||||||||||||||||||    
T  5777562 cacatgttagtaatttctatttttagtgtaacttaagatagaag--------tataacaacaatgcatacatacaagaaatactttataa 5777481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 122 - 211
Target Start/End: Complemental strand, 5793172 - 5793091
Alignment:
Q  122 cacatgttagtaacttctatttttagtgcaacttaagatagaagagtaagtatataacagcaatgtatgcatacaagaaatactttataa 211  Q
    ||||||||||||| |||||||||||||| |||||||||||||||        ||||||| ||||| ||||||| ||||||||||||||||    
T  5793172 cacatgttagtaatttctatttttagtgtaacttaagatagaag--------tataacaacaatgcatgcatataagaaatactttataa 5793091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 313 - 360
Target Start/End: Original strand, 5797813 - 5797860
Alignment:
Q  313 tacattctttcataatacgtcacactttgttagtgggttgcaatgtca 360  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||||||||    
T  5797813 tacattctttcattataagtcacactttgttagggggttgcaatgtca 5797860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 360
Target Start/End: Complemental strand, 5828219 - 5828175
Alignment:
Q  316 attctttcataatacgtcacactttgttagtgggttgcaatgtca 360  Q
    |||||||||| ||| |||||||||||||| |||||||||||||||    
T  5828219 attctttcatgataagtcacactttgttaatgggttgcaatgtca 5828175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 360
Target Start/End: Complemental strand, 5772380 - 5772334
Alignment:
Q  313 tacattctttcataatacgtcacactttgttagtgggttgcaatgtca 360  Q
    ||||||||||||||||| |||||||||| |||| ||||||||||||||    
T  5772380 tacattctttcataataagtcacactttattag-gggttgcaatgtca 5772334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 177 - 211
Target Start/End: Complemental strand, 5827986 - 5827952
Alignment:
Q  177 aacagcaatgtatgcatacaagaaatactttataa 211  Q
    |||| ||||||||||||||||||||||||||||||    
T  5827986 aacaacaatgtatgcatacaagaaatactttataa 5827952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 5793415 - 5793378
Alignment:
Q  174 tataacagcaatgtatgcatacaagaaatactttataa 211  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  5793415 tataacagcaacgtatgcatacaaaaaatactttataa 5793378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 211
Target Start/End: Complemental strand, 5795404 - 5795367
Alignment:
Q  174 tataacagcaatgtatgcatacaagaaatactttataa 211  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  5795404 tatagcagcaatgtatgtatacaagaaatactttataa 5795367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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