View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4164_low_10 (Length: 259)

Name: NF4164_low_10
Description: NF4164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4164_low_10
NF4164_low_10
[»] chr5 (3 HSPs)
chr5 (17-248)||(9076858-9077089)
chr5 (139-186)||(37652888-37652935)
chr5 (143-187)||(6155476-6155520)
[»] chr3 (4 HSPs)
chr3 (139-186)||(55431303-55431350)
chr3 (196-241)||(795407-795452)
chr3 (194-242)||(26706830-26706878)
chr3 (143-187)||(27708870-27708914)
[»] chr4 (1 HSPs)
chr4 (132-165)||(19906234-19906267)
[»] chr8 (2 HSPs)
chr8 (139-187)||(1911026-1911074)
chr8 (143-187)||(44925980-44926024)
[»] chr1 (2 HSPs)
chr1 (143-187)||(10140083-10140127)
chr1 (139-187)||(47455443-47455491)


Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 9076858 - 9077089
Alignment:
Q  17 ttttatcgggaaacccataatttgcgcaagcacaaaagtaccttatgcatcacgtaaacatattctgttgtttttagaattagaaaagtaacttttnnnn 116  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  9076858 ttttatcgggaaactcataatttgcgcaagcacaaaagtaccttatgcatcacgtaaacatattctgttgtttttagaattagaaaagtaacttttaaaa 9076957  T
Q  117 nnngaaatcaccattgaagatattattaggttgagtcacgatcaggtcgttctgtttcaaacgtttcgtggtatcatcaagtttatgcaagatagactaa 216  Q
       |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||    
T  9076958 aaagaaatcaccattgaagatattattgggttgagtcacgatcaggtcgttctgtttcaaacgtgtcgtggtaccatcgagtttatgcaagatagactaa 9077057  T
Q  217 caattgtgccgcctccagaataaaatagttca 248  Q
    ||| || ||||| |||||||||||| ||||||    
T  9077058 caactgcgccgcttccagaataaaacagttca 9077089  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 37652935 - 37652888
Alignment:
Q  139 ttattaggttgagtcacgatcaggtcgttctgtttcaaacgtttcgtg 186  Q
    ||||||||||||||||||||||||||| ||| ||| | ||||||||||    
T  37652935 ttattaggttgagtcacgatcaggtcgctctctttaagacgtttcgtg 37652888  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 6155520 - 6155476
Alignment:
Q  143 taggttgagtcacgatcaggtcgttctgtttcaaacgtttcgtgg 187  Q
    ||||||||||||||||||||||| ||| ||| | |||||||||||    
T  6155520 taggttgagtcacgatcaggtcgctctctttaagacgtttcgtgg 6155476  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 55431303 - 55431350
Alignment:
Q  139 ttattaggttgagtcacgatcaggtcgttctgtttcaaacgtttcgtg 186  Q
    ||||||||||||||||||||||||||| ||| ||| | ||||||||||    
T  55431303 ttattaggttgagtcacgatcaggtcgctctctttaagacgtttcgtg 55431350  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 795452 - 795407
Alignment:
Q  196 agtttatgcaagatagactaacaattgtgccgcctccagaataaaa 241  Q
    |||||||||||| |||||||||||  ||||||||||||| ||||||    
T  795452 agtttatgcaaggtagactaacaaccgtgccgcctccaggataaaa 795407  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 242
Target Start/End: Original strand, 26706830 - 26706878
Alignment:
Q  194 caagtttatgcaagatagactaacaattgtgccgcctccagaataaaat 242  Q
    ||||||| |||||| ||||||||||| || ||||||||||| |||||||    
T  26706830 caagtttgtgcaaggtagactaacaactgcgccgcctccaggataaaat 26706878  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 27708870 - 27708914
Alignment:
Q  143 taggttgagtcacgatcaggtcgttctgtttcaaacgtttcgtgg 187  Q
    ||||||||||||||| ||||||||||| ||| | |||||||||||    
T  27708870 taggttgagtcacgaccaggtcgttctctttaagacgtttcgtgg 27708914  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 165
Target Start/End: Original strand, 19906234 - 19906267
Alignment:
Q  132 gaagatattattaggttgagtcacgatcaggtcg 165  Q
    |||| |||||||||||||||||||||||||||||    
T  19906234 gaagttattattaggttgagtcacgatcaggtcg 19906267  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 1911074 - 1911026
Alignment:
Q  139 ttattaggttgagtcacgatcaggtcgttctgtttcaaacgtttcgtgg 187  Q
    |||||||||| |||||||||||||||| ||| ||| | |||||||||||    
T  1911074 ttattaggttaagtcacgatcaggtcgctctctttaagacgtttcgtgg 1911026  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 44926024 - 44925980
Alignment:
Q  143 taggttgagtcacgatcaggtcgttctgtttcaaacgtttcgtgg 187  Q
    ||||||||||||||| ||||||| ||| ||| |||||||||||||    
T  44926024 taggttgagtcacgaccaggtcgctctctttaaaacgtttcgtgg 44925980  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 10140083 - 10140127
Alignment:
Q  143 taggttgagtcacgatcaggtcgttctgtttcaaacgtttcgtgg 187  Q
    ||||||||||||||||||||||| ||| ||| | |||||||||||    
T  10140083 taggttgagtcacgatcaggtcgctctctttaacacgtttcgtgg 10140127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 47455491 - 47455443
Alignment:
Q  139 ttattaggttgagtcacgatcaggtcgttctgtttcaaacgtttcgtgg 187  Q
    ||||||||||||||||||| ||||||| ||| ||| | |||||||||||    
T  47455491 ttattaggttgagtcacgaccaggtcgctctctttaagacgtttcgtgg 47455443  T

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