View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4164_low_11 (Length: 255)
Name: NF4164_low_11
Description: NF4164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4164_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 84 - 245
Target Start/End: Complemental strand, 7096911 - 7096750
Alignment:
| Q |
84 |
ttccccctctttgtacaacatggacaaagccagtgaatcaatgactcgagtgtaatattgattgtgctcttttttaacctgaagggaggtttggtattga |
183 |
Q |
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| T |
7096911 |
ttccccctctttgtacaacatggacaaagccaatgaatcaatgactcgagtgtaacattgattgtgctctttttcaacgtgaagggaggtttggtattaa |
7096812 |
T |
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| Q |
184 |
tatttgttttcatgacagtcttggtcatcttattcaagctcatatacgaatttttccctttg |
245 |
Q |
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| T |
7096811 |
tatttgttttcatgacagtcttggtcatcttattcaagctcatacacagatttttccctttg |
7096750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 119 - 245
Target Start/End: Original strand, 8799468 - 8799594
Alignment:
| Q |
119 |
aatcaatgactcgagtgtaatattgattgtgctcttttttaacctgaagggaggtttggtattgatatttgttttcatgacagtcttggtcatcttattc |
218 |
Q |
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| T |
8799468 |
aatcaatgactcgagtgtaacattaattgtgctctttttcaacttgaagggaggtttggtattaatatttgtttttatgacagtcttggtcatcttattc |
8799567 |
T |
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| Q |
219 |
aagctcatatacgaatttttccctttg |
245 |
Q |
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| T |
8799568 |
aagctcatacacagatttttccctttg |
8799594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 7097579 - 7097510
Alignment:
| Q |
19 |
ctttaaatttcacgtttgtaatgaattggt-ttttaagttatttttgtaattggttcgacatagtcttcc |
87 |
Q |
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| T |
7097579 |
ctttaaatttcacgtttgtaatgaattggtcttttaagttatttttgtaattggttcgacgtagtcttcc |
7097510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 8798806 - 8798875
Alignment:
| Q |
19 |
ctttaaatttcacgtttgtaatgaattggt-ttttaagttatttttgtaattggttcgacatagtcttcc |
87 |
Q |
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| T |
8798806 |
ctttaaatttcacgtttgtaatgaattggtcttttaagttatttttgtaattggttcgacgtagtcttcc |
8798875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 225
Target Start/End: Complemental strand, 32885337 - 32885244
Alignment:
| Q |
132 |
agtgtaatattgattgtgctcttttttaacctgaagggaggtttggtattgatatttgttttcatgacagtcttggtcatcttattcaagctca |
225 |
Q |
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| T |
32885337 |
agtgtaatattgattgtgccttttttgaatctgaaggaaaatttggtgttggtatctgtttttgagacagctttggacatcttattcaagctca |
32885244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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