View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4164_low_3 (Length: 495)
Name: NF4164_low_3
Description: NF4164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4164_low_3 |
 | |
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| [»] scaffold0002 (1 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 483
Target Start/End: Original strand, 42281065 - 42281524
Alignment:
| Q |
18 |
accaaatcaaaggcctaagagattgatcaagagacctagcagattcaatacttaaatgtatctctagtagcattcaaggaagagggtaaatccatgagct |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42281065 |
accaaatcaaaggcctaagagattgatcaagagacctagcagattcaatacttaaatgtatatctagtagcattcaaggaagagggtaaatccatgagct |
42281164 |
T |
|
| Q |
118 |
gatacaaatatctctagtaccattagtacctgaaaaagcataagaataaaaatagttagcaannnnnnnnnn-atattttaatcaatggggtgaagacaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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|
| T |
42281165 |
gatacaaatatctctagtaccattagtacctgaaaaaggataagaataaaaatagttagcaatttttttttttatattttaatcaatgggatgaagacaa |
42281264 |
T |
|
| Q |
217 |
ttagtgtctcaatatcctataatctatatcctaggaagaattgtatcgtctctagcattatatgaattgtgtttgcgtttggactgatcatatttttgtt |
316 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42281265 |
ttagtgtctcaatatcctat-------atcctaggaagaattgtatcgtctctagcattatatgaattgtgtttgcgtttggactgatcatatttttgtt |
42281357 |
T |
|
| Q |
317 |
tcttgctttatctttctagttttggttttaccatgttaacttggaaatttcttgtgaccttgttttccaataattaaatttgtggttcataattgctcta |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42281358 |
tcttgctttatctttctagttttggttttaccatgtcaacttggaaatttcttgtgaccttgttttccaataattaaatttgtggttcataattgctcta |
42281457 |
T |
|
| Q |
417 |
catggcttacattgaactatgcacacatgacaacagtgcgtgcattcataaggaaacacaatgatga |
483 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42281458 |
catggcttacattgaactatgcacacatgacaacagtgcgtgcattcataaggaaacacaatgatga |
42281524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 18 - 480
Target Start/End: Original strand, 42254705 - 42255165
Alignment:
| Q |
18 |
accaaatcaaaggcctaagagattgatcaagagacctagcagattcaatacttaaatgtatctctagtagcattcaaggaagagggtaaatccatgagct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
42254705 |
accaaatcaaaggcctaagagattgatcaagagacctagcagattcaatacttaaatgtatctctataagcattcaaggaagagggtaaatccatgagct |
42254804 |
T |
|
| Q |
118 |
gatacaaatatctctagtaccattagtacctgaaaaagcataagaataaaaatagttagcaannnnnnnnnnatattttaatcaatggggtgaagacaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||| |
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|
| T |
42254805 |
gatacaaatatctctagtaccattagtacctgaaaaaggataagaataaaaatagttagcaattttcttttatatttttaatcaatgggatgaagacaat |
42254904 |
T |
|
| Q |
218 |
tagtgtctcaatatcctataatctatatcctaggaagaattgtatcgtctctagcattatatgaattgtgtttgcgtttggact-gatcatatttttgtt |
316 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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|
| T |
42254905 |
tagtgtctcaatatcctata-------tcctaggaagaattgtatcgtctctagcattatatgaatcgtgtttgcgtttggacttgatcatatttttgtt |
42254997 |
T |
|
| Q |
317 |
tcttgctttatctttctagttttggttttaccatgttaacttggaaatttcttgtgaccttgttttccaataattaaatt----tgtggttcataattgc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| | |||||||| |||||||||||||| | |
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| T |
42254998 |
tcttgctttatctttctagttttggttttaccatgttaacttggaaatttctagtttccttgttttcctagaattaaataaatgtgtggttcataatttc |
42255097 |
T |
|
| Q |
413 |
tctacatggcttacattgaactatgcacacatgacaacagtgcgtgcattcataaggaaacacaatga |
480 |
Q |
| |
|
|||||||||||| |||| |||| ||||||| ||| |||||| |||||||||||||||||||||||| |
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|
| T |
42255098 |
tctacatggcttgaattggactacgcacacacgacgacagtgtctgcattcataaggaaacacaatga |
42255165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 190 - 483
Target Start/End: Original strand, 42285607 - 42285898
Alignment:
| Q |
190 |
atattttaatcaatggggtgaagacaattagtgtctcaatatcctataatctatatcctaggaagaattgtatcgtctctagcattatatgaattgtgtt |
289 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||| |
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|
| T |
42285607 |
atattttaatcaatgggatgaagacaattagtgtctcaatatcctata-------tcctatgaagaattgtgtcgtctctagcattatatgaattgtgtt |
42285699 |
T |
|
| Q |
290 |
tgcgtttggact-gatcatatttttgtttcttgctttatctttctagttttggttttaccatgttaacttggaaatttcttgtgaccttgttttccaata |
388 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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|
| T |
42285700 |
tgcatttggacttgatcatatttttgtttcttgctttatctttctagttttggttttaccatgttaacttggaaatttcttgttaccttgttttccaaaa |
42285799 |
T |
|
| Q |
389 |
attaaatt----tgtggttcataattgctctacatggcttacattgaactatgcacacatgacaacagtgcgtgcattcataaggaaacacaatgatga |
483 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||| | |||| ||||||| |||||||||||||||||||| |
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|
| T |
42285800 |
attaaataaatgtgtggttcataattgctcaacatggcttacattggactatgcacacatgacgagagtgtgtgcatttataaggaaacacaatgatga |
42285898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 190 - 430
Target Start/End: Original strand, 42272573 - 42272811
Alignment:
| Q |
190 |
atattttaatcaatggggtgaagacaattagtgtctcaatatcctataatctatatcctaggaagaattgtatcgtctctagcattatatgaattgtgtt |
289 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||| |
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|
| T |
42272573 |
atattttaatcaatgggatgaagacaattagtgtctcaatatcctata-------tcctatgaagaattgtgtcgtctctagcattatatgaattgtgtt |
42272665 |
T |
|
| Q |
290 |
tgcgtttggact-gatcatatttttgtttcttgctttatctttctagttttggttttaccatgttaacttggaaatttcttgtgaccttgttttccaata |
388 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
42272666 |
tgcgtttggacttgatcatatttttgtttcttgctttatctttctagttttggttttaccatgttaacttggaaatttcttgttaccttgttttccaaga |
42272765 |
T |
|
| Q |
389 |
attaaa----tttgtggttcataattgctctacatggcttacattg |
430 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
42272766 |
attaaataattgtgtggttcataattgctctacatggcttacattg |
42272811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 18 - 483
Target Start/End: Original strand, 42260233 - 42260696
Alignment:
| Q |
18 |
accaaatcaaaggcctaagagattgatcaagagacctagcagattcaatacttaaatgtatctctagtagcattcaaggaagagggtaaatccatgagct |
117 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| ||| ||| |||||| ||||||| ||| |||||||||||||| |
|
|
| T |
42260233 |
accaaaacaaaggcccaagagattgatcaagagacctagcagattcaataattaaatatattgctattagcat-caaggaataggataaatccatgagct |
42260331 |
T |
|
| Q |
118 |
gatacaaatatctctagtaccattagtacctgaaaaagcataagaataaaaatagttagcaannnnnnnnnnatattttaatcaatggggtgaagacaat |
217 |
Q |
| |
|
||||||| | || || |||||||| ||||| | ||||||||||||||| |||| || |||||||||||||||| ||||||||| |
|
|
| T |
42260332 |
gatacaagtt------gt-cctttagtaccagaaaatggataagaataaaaataattaggaattttctttt-atattttaatcaatggatcgaagacaat |
42260423 |
T |
|
| Q |
218 |
tagtgtctcaatatcctataatctatatcctaggaagaattgtatcgt-------ctctagcattatatgaattgtgtttgcgtttggactgatcatatt |
310 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
42260424 |
tagtgtctcaatatcctata-------tcctaggaagaattgtatcgtttctactctctagcattatatgaatagtgtttgcgtttggactgattatatt |
42260516 |
T |
|
| Q |
311 |
tttgtttcttgctttatctttctagttttggttttacca---tgttaacttggaaatttcttgtgaccttgttttcca----ataattaaatttgtggtt |
403 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||| ||||| ||||||| |
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|
| T |
42260517 |
tttatttcttgctttatctttctagttttggttttaccatgttgttaacttggaaatttcttgttaccttgttttccaggagttaaataaatgtgtggtt |
42260616 |
T |
|
| Q |
404 |
cataattgctctacatggcttacattgaactatgcacacatgacaacagtgcgtgcattcataaggaaacacaatgatga |
483 |
Q |
| |
|
||||||| | | ||| |||||||||| ||| |||||||||||||||| || || |||| |||||||| ||||||||||| |
|
|
| T |
42260617 |
tataattgttttgcattgcttacattggactctgcacacatgacaacaatgtgtacatttataaggaatcacaatgatga |
42260696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 42269294 - 42269447
Alignment:
| Q |
18 |
accaaatcaaaggcctaagagattgatcaagagacctagcagattcaatacttaaatgtatctctagtagcattcaaggaagagggtaaatccatgagct |
117 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
42269294 |
accaaatcaaaggcccaagagattgatcaagagacctagcagattcaatacttaaatgtatctctagaagcattcaaggaagagggtaaatccatgagct |
42269393 |
T |
|
| Q |
118 |
gatacaaatatctctagtaccattagtacctgaaaaagcataagaataaaaata |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42269394 |
gatacaaatatctctagtaccattagtacctgaaaaagcataagaataaaaata |
42269447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 252 - 369
Target Start/End: Original strand, 42269481 - 42269598
Alignment:
| Q |
252 |
aagaattgtatcgtctctagcattatatgaattgtgtttgcgtttggactgatcatatttttgtttcttgctttatctttctagttttggttttaccatg |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42269481 |
aagaattgtatcgtctctagcattatatgacttgcgtttgcgtttggactgatcatatttttgtttcttgctttatctttctagttttggttttacaatg |
42269580 |
T |
|
| Q |
352 |
ttaacttggaaatttctt |
369 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
42269581 |
ttaacttggaaaattctt |
42269598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 167; Significance: 3e-89; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 18 - 483
Target Start/End: Original strand, 489068 - 489531
Alignment:
| Q |
18 |
accaaatcaaaggcctaagagattgatcaagagacctagcagattcaatacttaaatgtatctctagtagcattcaaggaagagggtaaatccatgagct |
117 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| ||| ||| |||||| ||||||| ||| |||||||||||||| |
|
|
| T |
489068 |
accaaaacaaaggcccaagagattgatcaagagacctagcagattcaataattaaatatattgctattagcat-caaggaataggataaatccatgagct |
489166 |
T |
|
| Q |
118 |
gatacaaatatctctagtaccattagtacctgaaaaagcataagaataaaaatagttagcaannnnnnnnnnatattttaatcaatggggtgaagacaat |
217 |
Q |
| |
|
||||||| | || || |||||||| ||||| | ||||||||||||||| |||| || |||||||||||||||| ||||||||| |
|
|
| T |
489167 |
gatacaagtt------gt-cctttagtaccagaaaatggataagaataaaaataattaggaattttctttt-atattttaatcaatggatcgaagacaat |
489258 |
T |
|
| Q |
218 |
tagtgtctcaatatcctataatctatatcctaggaagaattgtatcgt-------ctctagcattatatgaattgtgtttgcgtttggactgatcatatt |
310 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
489259 |
tagtgtctcaatatcctata-------tcctaggaagaattgtatcgtttctactctctagcattatatgaatagtgtttgcgtttggactgattatatt |
489351 |
T |
|
| Q |
311 |
tttgtttcttgctttatctttctagttttggttttacca---tgttaacttggaaatttcttgtgaccttgttttcca----ataattaaatttgtggtt |
403 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||| ||||| ||||||| |
|
|
| T |
489352 |
tttatttcttgctttatctttctagttttggttttaccatgttgttaacttggaaatttcttgttaccttgttttccaggagttaaataaatgtgtggtt |
489451 |
T |
|
| Q |
404 |
cataattgctctacatggcttacattgaactatgcacacatgacaacagtgcgtgcattcataaggaaacacaatgatga |
483 |
Q |
| |
|
||||||| | | ||| |||||||||| ||| |||||||||||||||| || || |||| |||||||| ||||||||||| |
|
|
| T |
489452 |
tataattgttttgcattgcttacattggactctgcacacatgacaacaatgtgtacatttataaggaatcacaatgatga |
489531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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