View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4164_low_6 (Length: 405)
Name: NF4164_low_6
Description: NF4164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4164_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 7673684 - 7674070
Alignment:
| Q |
1 |
aaaaaatattcattaactataatcaaatctacacaatcagctgtaactaactgcgtgaatgtgtgatgtccgtgagtgaccgcaattaatccagtttcca |
100 |
Q |
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| T |
7673684 |
aaaaaatattcattaactataatcaaatctacacaatcagctgtaactaactgcatgaatgtgtgatgtccgtgagtgaccgcaactaatccaatttcca |
7673783 |
T |
|
| Q |
101 |
ttattttatcaattcacacaacatttttgtttcaattcattaggataagaatgctatgatataaagtggacaaattatggtgagctaatcattattttgt |
200 |
Q |
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| T |
7673784 |
ttattttatcaattcacacaacttttttgtttcaattcattaggataagaatgctatgatataaagtggacaaattatggtgagctaatcattattt--t |
7673881 |
T |
|
| Q |
201 |
gtgtttggaaatgatttgtcctagttacacttacactgtacgttactcatttaagacttagaccaccgcatttaaacaccatgatatcgtgcaaacatga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7673882 |
gtgtttggaaatgatttgtcctagttacacttacactgtatgctactcattcaagacttagaccaccgcatttaaacaccatgatatcgtgcaaacatga |
7673981 |
T |
|
| Q |
301 |
cgttagtgccaacatgtaagtcaagtttagtgaaaacttgtcatgacccaaaaacaaaacaacaatattttgaataaaatactcaattt |
389 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7673982 |
cgttagtgccaagatgtaagtcaagtttagtgaaaacttgtcatgacccaaaaacaaaacaacaatattttgaataaaatactcaattt |
7674070 |
T |
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