View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4164_low_8 (Length: 333)
Name: NF4164_low_8
Description: NF4164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4164_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 53046202 - 53046510
Alignment:
| Q |
11 |
cagagagtatgcaagctatacaagttaactcagtatgtcatcttgtctgtttgtagtggccattctagcccctcattttgtatgggcaatttataataaa |
110 |
Q |
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| T |
53046202 |
cagagagtatgcaagctatacaagttaactcagtatgtcatcttgtctgtttgtagtggccattctagcccctcattttgtatgggcaatttataataaa |
53046301 |
T |
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| Q |
111 |
ataaaaataatcacaatttttcttttcattgtcttcgtcaaccaggctgcttccgccttgaattcctcttattgctacatacttcagagtgagtctgttg |
210 |
Q |
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| T |
53046302 |
ataaaaataatcacaatttttcttttcattgtcttcgtcaaccaggctgcttcctccttgaattcctcttattgctacatacttcagagtgagtccgttg |
53046401 |
T |
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| Q |
211 |
tttttacatggtatggaaatcttacaaattctgatgaccaagaactcgctgagagaatgctggatttaattaaggtttgtatgtttcaaaatacttatat |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
53046402 |
tttttacatggtatggaaatcttacaaattctgatgaccaagaactcgctgagagaatgctggatttaattaaggtttgtatgtttcaagatacttatat |
53046501 |
T |
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| Q |
311 |
gtgaaaaat |
319 |
Q |
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| T |
53046502 |
gtgaaaaat |
53046510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 15960820 - 15960771
Alignment:
| Q |
147 |
gtcaaccaggctgcttccgccttgaattcctcttattgctacatacttca |
196 |
Q |
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| T |
15960820 |
gtcaaccaggttgcttcttccttgaattcctcttattgctatatacttca |
15960771 |
T |
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