View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4164_low_9 (Length: 328)
Name: NF4164_low_9
Description: NF4164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4164_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 8e-95; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 135 - 318
Target Start/End: Complemental strand, 16462301 - 16462118
Alignment:
| Q |
135 |
cttttggcttggagatcaagaaacttactttataagattttccgtttccaaggacaacagttgactggaaattcctatcgatattagaggctgcaaccgt |
234 |
Q |
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| T |
16462301 |
cttttggcttggagatcaagaaacttactttataagcttttccgtttccaaggacaacagttgactggaaattcctatcgatattagaggctgcaaccgt |
16462202 |
T |
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| Q |
235 |
aaatatccatggtgctgtgttgacaacagtgtaatgatcaggaccatcatttccagctgaacacacaaccatgacacccctttg |
318 |
Q |
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| T |
16462201 |
aaatatccatggtgctgtgttgacaacagtgtaatgatcaggaccttcatttccagctgaacacacaaccatgacacccctttg |
16462118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 16462460 - 16462340
Alignment:
| Q |
17 |
aaaattgaattaattttagatcaaatccgcgtccaatatccaacatgtgttaagtatctgacagttatgttttctttgattaatatcggtgtctacatat |
116 |
Q |
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| T |
16462460 |
aaaattgaattaattttagatcaaatgcgcgtctaatatccaacatgtgttaagtatctgacagttatgttttctttgattaatatcggtgtctaaatat |
16462361 |
T |
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| Q |
117 |
cagtgtctagtgtttgtgctt |
137 |
Q |
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| T |
16462360 |
cagtgtctagtgtttgtgctt |
16462340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 146 - 318
Target Start/End: Complemental strand, 16492196 - 16492024
Alignment:
| Q |
146 |
gagatcaagaaacttactttataagattttccgtttccaaggacaacagttgactggaaattcctatcgatattagaggctgcaaccgtaaatatccatg |
245 |
Q |
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| T |
16492196 |
gagatcaagaaacttacttggaaactttttccatttccaaggacaatagttgactgaaagttcctatcaatattagaagctgcaactgtaaatatccatg |
16492097 |
T |
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| Q |
246 |
gtgctgtgttgacaacagtgtaatgatcaggaccatcatttccagctgaacacacaaccatgacacccctttg |
318 |
Q |
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| T |
16492096 |
gtgctgtgttgacaactgtgttaggatcaggaccatcattcccagctgaacacacaaccgtgacccccctttg |
16492024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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