View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4165_low_3 (Length: 361)
Name: NF4165_low_3
Description: NF4165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4165_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 11113490 - 11113159
Alignment:
| Q |
19 |
cttacaagacatcaattctcgtattagagctacatgcaaacaaacaaaatacatatgctttcaaattggacaagttttctttcattaatacaataaaaga |
118 |
Q |
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| T |
11113490 |
cttacaagacatcaattctcgtaatagagctacatgcaaacaaacaaaatacatatgctttcaaattggacaagttttctttcattaatacaataaaaga |
11113391 |
T |
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| Q |
119 |
acagtacatacatactcattcaatatagtggttcttattctcttagctttacaataaataataataagcaatgacccttaacataataagtaaaaatgaa |
218 |
Q |
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| T |
11113390 |
acagtacatacatactcattcaatatagtggttcttattctcttagctttacaataaataataataagcaatgacccttaacataataagtaaaaatgaa |
11113291 |
T |
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| Q |
219 |
tnnnnnnnngatatggaaagacacttatgtgttgtgttagttacttagtttgagaggaacaattcgaaggggttgagccttttgtagagtaatcccaaat |
318 |
Q |
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| T |
11113290 |
taaaaaaaagatatggaaagacacttgtgtgttgtgttagttacttagtttgagaggaacaattcgaagtggttgagcctcccgtagagtaatcccaaat |
11113191 |
T |
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| Q |
319 |
ttatcatccatgttcatatcttttggtttcat |
350 |
Q |
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| T |
11113190 |
ttatcatccatgttcatatcttctggtttcat |
11113159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 178 - 350
Target Start/End: Original strand, 11106159 - 11106321
Alignment:
| Q |
178 |
aataataagcaatgacccttaacataataagtaaaaatgaatnnnnnnnngatatggaaagacacttatgtgttgtgttagttacttagtttgagaggaa |
277 |
Q |
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| T |
11106159 |
aataataagcaatgacccttaacatagcaagtaaaaatgaa---gcaaaagatatggaaaaacactt-------gtgttagttacttagtttgagaggaa |
11106248 |
T |
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| Q |
278 |
caattcgaaggggttgagccttttgtagagtaatcccaaatttatcatccatgttcatatcttttggtttcat |
350 |
Q |
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| T |
11106249 |
caattcgaaggggttgagccttttgtagagtaatcccaaatttatcatccatgttcatatcttctggtttcat |
11106321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 270 - 350
Target Start/End: Complemental strand, 46927831 - 46927751
Alignment:
| Q |
270 |
gagaggaacaattcgaaggggttgagccttttgtagagtaatcccaaatttatcatccatgttcatatcttttggtttcat |
350 |
Q |
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| T |
46927831 |
gagaggaagaattcgaaggggtttggctttttgaagagtaagtccaaatttatcatccatatccatatcttctggtttcat |
46927751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 273 - 355
Target Start/End: Complemental strand, 46934698 - 46934616
Alignment:
| Q |
273 |
aggaacaattcgaaggggttgagccttttgtagagtaatcccaaatttatcatccatgttcatatcttttggtttcatctcac |
355 |
Q |
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| T |
46934698 |
aggaacaactcgaaggggttgtgccttttgcaaggtaatgccgaatttatcattcatgtccatatcttctggtttcatgtcac |
46934616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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