View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4165_low_4 (Length: 352)
Name: NF4165_low_4
Description: NF4165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4165_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 337
Target Start/End: Original strand, 44436887 - 44437211
Alignment:
| Q |
13 |
gagatgaagagattgtga--tgaccgagtttccacccttgttaaccttaacatgacaaggtaaaaaccttcaaagtcccataaatttagcccgccatgat |
110 |
Q |
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| T |
44436887 |
gagatgaagagattgtgacatgactgagtttccacccttgttaaccttaacatggcaaggtaaaaaccttcaaagtcccataaatttagcccgccatgat |
44436986 |
T |
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| Q |
111 |
atttgtttgtcgctctatcctaccttaacctcaaggttatgaccaccannnnnnnggttttccaacatagggaatttaacatgagctcaatttcctcacc |
210 |
Q |
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| T |
44436987 |
atttgtttgtcgctctatcctaccttaacctcaaggttatgaccaccatttttttggtattccaacatagggaatttaacatgagctcaatttcctcacc |
44437086 |
T |
|
| Q |
211 |
caaagtagtagggagaagaaaaacacccataaaacaggatgagatgacttgaactaatactttcataaaaactaattatttacttactatcgagaaggat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44437087 |
caaagtagtagggagaagaaaaacacccataaaacaagatgagatgactt--actaatactttcataaaaactaattatttacttactatcgagaaggat |
44437184 |
T |
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| Q |
311 |
ccagaattccatgttgaatgttctttc |
337 |
Q |
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||||||||||||||||||||||||||| |
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| T |
44437185 |
ccagaattccatgttgaatgttctttc |
44437211 |
T |
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