View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4165_low_7 (Length: 310)
Name: NF4165_low_7
Description: NF4165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4165_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 35631155 - 35631335
Alignment:
| Q |
14 |
tgttgctgctgccaccattgttggattgaaattcaataactgagaaacccttgaaattaaaattcatataaagtaggaagaaggtaaaagaagacttaag |
113 |
Q |
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| T |
35631155 |
tgtttctgctgccaccattgttggattgaaattcaataactgagaaacccttgaaatgaaaattcatataaagtaggaagaaggtaaaagaagacttaag |
35631254 |
T |
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| Q |
114 |
tttgctaaggtatcagaatttccggtgaaaatttaacaaattaaagaggaagaacagttatacgtttcagtattaatgtcc |
194 |
Q |
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| T |
35631255 |
tttgctaaggtatcagaatttccggtgaaaatctaacaaattaaagaggaagaacagttatacgtttcagtattaatgtcc |
35631335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 287
Target Start/End: Original strand, 35631367 - 35631406
Alignment:
| Q |
248 |
ttccaagaatataggtcctgaattgaacaattcaaccgtt |
287 |
Q |
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| T |
35631367 |
ttccaagaatataggtcctgaattgaacaattcaaccgtt |
35631406 |
T |
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