View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4165_low_8 (Length: 244)
Name: NF4165_low_8
Description: NF4165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4165_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 18790276 - 18790381
Alignment:
| Q |
1 |
gagggattgcgtctgaagtaaacatggcataaattaaagagtacaatcgtcactaaaaaacaagggtttgtgacgatgtgaggctaagttgaagaagtga |
100 |
Q |
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| T |
18790276 |
gagggattgcgtctgaagtaaacatgacataaattaaagagtacaatcgtcactaaaaaacaagggtttgtgaggatgtgaggctaagttgaagaagtga |
18790375 |
T |
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| Q |
101 |
caacat |
106 |
Q |
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|||||| |
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| T |
18790376 |
caacat |
18790381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 18790820 - 18790892
Alignment:
| Q |
173 |
atcaattttaattattatttt-ttgacaaagtgctactacttatattgttgaaaagtctagttttaatgcatt |
244 |
Q |
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| T |
18790820 |
atcaattttaattattatttttttgacaaagtgctactacttatattgttgaaaagtctagttataatgcatt |
18790892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 18812061 - 18812138
Alignment:
| Q |
29 |
ataaattaaagagtacaatcgtcactaaaaaacaagggtttgtgacgatgtgaggctaagttgaagaagtgacaacat |
106 |
Q |
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| T |
18812061 |
ataaattaaagagtacaatcgtcactcaaaaacaggggtttgtgacgatatgaggttgaattggagaagtgacaacat |
18812138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 18790172 - 18790252
Alignment:
| Q |
26 |
ggcataaattaaagagtacaatcgtcactaaaaaacaagggtttgtgacgatgtgaggctaagttgaagaagtgacaacat |
106 |
Q |
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| T |
18790172 |
ggcataaattaaaaagtacaatcgtcacacaaacacaagggtttgtgatgatgtgaggttgaattggagaagtgacaacat |
18790252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 18790752 - 18790796
Alignment:
| Q |
107 |
ataccttgtgaaaaacataaatttataaaaagaaacacttatcaa |
151 |
Q |
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| T |
18790752 |
ataccttgtgaaaaacataaatttataaaaagaaacacttctcaa |
18790796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 197 - 244
Target Start/End: Original strand, 18812598 - 18812645
Alignment:
| Q |
197 |
acaaagtgctactacttatattgttgaaaagtctagttttaatgcatt |
244 |
Q |
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| T |
18812598 |
acaaagtgctactacttatattgttaaaaagtctagttataatgcatt |
18812645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 18812509 - 18812551
Alignment:
| Q |
109 |
accttgtgaaaaacataaatttataaaaagaaacacttatcaa |
151 |
Q |
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| T |
18812509 |
accttgtgaaaaacataaattcataaaaagaaacacttatcaa |
18812551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 46766463 - 46766428
Alignment:
| Q |
28 |
cataaattaaagagtacaatcgtcactaaaaaacaa |
63 |
Q |
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| T |
46766463 |
cataaattaaagaatacaatcgtcactaaaaaacaa |
46766428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 45572381 - 45572325
Alignment:
| Q |
29 |
ataaattaaagagtacaatcgtcac-taaaaaacaagggtttgtgacgatgtgaggct |
85 |
Q |
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||||||||||||||||||||||||| |||||||||| |||||||| | ||||||||| |
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| T |
45572381 |
ataaattaaagagtacaatcgtcacttaaaaaacaa-cgtttgtgatggtgtgaggct |
45572325 |
T |
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