View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4166_high_10 (Length: 428)
Name: NF4166_high_10
Description: NF4166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4166_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 411
Target Start/End: Original strand, 23166030 - 23166435
Alignment:
| Q |
17 |
ttcttactttgttaactgtccacttcatgaaggatgaagcacctcagcttgtgaacccacttgtggagtcatttgtggcacggcatgccaaatcttcatc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23166030 |
ttcttactttgttaactgtccacttcatgaaggatgaagcacctcagcttgtgaacccacttgtggagtcatttgtggcacggcatgccaaatcttcatc |
23166129 |
T |
|
| Q |
117 |
tcttaccccatcagttgattgattccctgactgtcactttattgatcctgccgggcacattgaaatcgtgtacatttcttcattcgcttccaccaagagt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23166130 |
tcttaccccatcagttgattgattccctgtctgtcactttattgatcctgccgggcacattgaaatcgtgtacatttcttcatttgcttccaccaagagt |
23166229 |
T |
|
| Q |
217 |
gggnnnnnnnnncttttgtatagtatatacattatgaattttctttccatcgaaagattcattttggaaggaaaagtaaggaagtagctacatcattgtt |
316 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23166230 |
ggg--ttttttacttttgtatagtatatacattatgaattttctttccatcgaaagattcattttggaaggaaaagtaaggaagtagctacatcattgtt |
23166327 |
T |
|
| Q |
317 |
gtcaaagtgagtagaattaaacaatta-------------atatgtgtattgtacatcattggttttgtatannnnnnncctcctaactttaggacttga |
403 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
23166328 |
gtcaaagtcagtagaattaaacaattaatttttatatattatatgtgtattgtacatcattggttttgtatatttttttcctcctaactttaggacttga |
23166427 |
T |
|
| Q |
404 |
ttccttgt |
411 |
Q |
| |
|
|||||||| |
|
|
| T |
23166428 |
ttccttgt |
23166435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University