View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4166_high_13 (Length: 357)
Name: NF4166_high_13
Description: NF4166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4166_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 220926 - 221209
Alignment:
| Q |
18 |
atcctgtgggattctaaattgcaaagttaaacaaaagtacattctatcactgttggaagacaatgattttattctagttaatcatcgtctcaatccaaag |
117 |
Q |
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| T |
220926 |
atcctgtgggattctaaattgcaaagttaaacaaaagtacattctatcactgttggaagacaatgattttattctagttaatcatcgtctcaatccaaag |
221025 |
T |
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| Q |
118 |
atccttatttagactccattgcagtggagccgaccgtccatagaacataaatcctaaatattttgaggatgcataccggtataagagccattgaccgtca |
217 |
Q |
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| T |
221026 |
atccttatttagactccatggcagtggaaccgaccgtccatagaacataaatcctaaatattttgaggatgcataccggtataagagccattgaccgtca |
221125 |
T |
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| Q |
218 |
caagaacgcagttcggttggtgatatgagagacatcaaaggcgtgctactagaaggttcagggttcgaaccctaaaaactaata |
301 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
221126 |
caagaatgcagttcggttggtgatatgagagacatcaaaggcgtactactagaaggttcagggttcgaaccctaaaaactaata |
221209 |
T |
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