View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4166_high_16 (Length: 339)
Name: NF4166_high_16
Description: NF4166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4166_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 112 - 327
Target Start/End: Complemental strand, 33861368 - 33861152
Alignment:
| Q |
112 |
tcttttggaaccaaacaaacaataaatagagaatataaaaccacatt-tggagtacgataaagttgttcaaatatcattactcatctnnnnnnntatgac |
210 |
Q |
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| T |
33861368 |
tcttttggaaccaaccaaacaataaatagagaatataaaaccacaatctggagtacgataaagttgttcaaatatcattactcatctaagaaaatatgac |
33861269 |
T |
|
| Q |
211 |
tccaccaccactatgtgtctatgaagtaatttccgctaaaatttgttaaactcggcataagtatagaagcttgatttctcgaattctatttgttaaaacc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33861268 |
tccaccaccactatgtgtctatgaagtaatttccgctaaaatttgttaaactcggcataagtatagaagcttgatttctcgaattctatttgttaaaacc |
33861169 |
T |
|
| Q |
311 |
tatcttcctttgggttc |
327 |
Q |
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||||||||||||||||| |
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| T |
33861168 |
tatcttcctttgggttc |
33861152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 33861444 - 33861344
Alignment:
| Q |
1 |
tgatgatgagtgaaagaggacagggacaacaagtatatctatccaagatatatttagacaacattctttttccttttcttttggaaccaaccaaacaata |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33861444 |
tgatgatgagtgaaagaggactgggacaacaagtatatctatccaagatatatttagacaacattctttttccttttcttttggaaccaaccaaacaata |
33861345 |
T |
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| Q |
101 |
a |
101 |
Q |
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| T |
33861344 |
a |
33861344 |
T |
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