View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4166_high_17 (Length: 319)

Name: NF4166_high_17
Description: NF4166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4166_high_17
NF4166_high_17
[»] chr7 (9 HSPs)
chr7 (11-301)||(44551982-44552272)
chr7 (134-254)||(5127-5247)
chr7 (211-259)||(5060846-5060894)
chr7 (223-258)||(38790883-38790918)
chr7 (136-253)||(38386178-38386295)
chr7 (211-259)||(20379700-20379748)
chr7 (211-259)||(42548159-42548207)
chr7 (134-188)||(38047715-38047769)
chr7 (212-257)||(33839475-33839520)
[»] chr4 (14 HSPs)
chr4 (21-257)||(628088-628324)
chr4 (22-251)||(40923737-40923966)
chr4 (98-257)||(37577159-37577318)
chr4 (119-259)||(37030907-37031047)
chr4 (67-141)||(628255-628329)
chr4 (134-254)||(24974101-24974221)
chr4 (21-90)||(40923787-40923856)
chr4 (73-257)||(51719668-51719852)
chr4 (134-188)||(12586753-12586807)
chr4 (212-257)||(34235737-34235782)
chr4 (134-257)||(55527868-55527991)
chr4 (210-240)||(53265809-53265839)
chr4 (212-257)||(33164538-33164583)
chr4 (212-257)||(54208180-54208225)
[»] chr8 (11 HSPs)
chr8 (14-259)||(9387765-9388010)
chr8 (75-257)||(9418587-9418769)
chr8 (18-90)||(9418703-9418775)
chr8 (134-258)||(5967192-5967316)
chr8 (211-257)||(33220819-33220865)
chr8 (212-257)||(31762241-31762286)
chr8 (212-257)||(33220024-33220068)
chr8 (223-258)||(23559027-23559062)
chr8 (134-257)||(34279516-34279639)
chr8 (212-257)||(43641006-43641051)
chr8 (211-251)||(9448729-9448769)
[»] chr2 (12 HSPs)
chr2 (20-253)||(25678729-25678962)
chr2 (21-257)||(24929175-24929411)
chr2 (72-257)||(943137-943321)
chr2 (12-90)||(943128-943206)
chr2 (66-141)||(24929169-24929244)
chr2 (211-257)||(37893040-37893086)
chr2 (212-257)||(8273245-8273290)
chr2 (211-259)||(20685004-20685052)
chr2 (212-259)||(38225727-38225774)
chr2 (211-257)||(20686834-20686880)
chr2 (211-256)||(12969296-12969340)
chr2 (211-259)||(12967268-12967316)
[»] scaffold0246 (2 HSPs)
scaffold0246 (47-259)||(2721-2933)
scaffold0246 (21-90)||(2746-2815)
[»] chr3 (26 HSPs)
chr3 (72-258)||(44430417-44430603)
chr3 (72-185)||(13840617-13840730)
chr3 (77-257)||(3860246-3860445)
chr3 (125-240)||(50664131-50664246)
chr3 (72-257)||(39685212-39685378)
chr3 (72-258)||(53814454-53814640)
chr3 (17-90)||(13840613-13840686)
chr3 (17-90)||(39685309-39685382)
chr3 (20-89)||(44430535-44430604)
chr3 (181-256)||(13843595-13843670)
chr3 (26-90)||(3860381-3860445)
chr3 (212-260)||(15040678-15040726)
chr3 (211-258)||(4969874-4969921)
chr3 (125-259)||(21566895-21567029)
chr3 (212-259)||(44836511-44836558)
chr3 (211-257)||(6162714-6162760)
chr3 (134-188)||(7665802-7665856)
chr3 (212-262)||(16931441-16931491)
chr3 (212-257)||(40517556-40517601)
chr3 (212-259)||(26998320-26998367)
chr3 (11-53)||(3860437-3860479)
chr3 (212-257)||(35069479-35069524)
chr3 (212-257)||(35485243-35485288)
chr3 (211-259)||(2325593-2325641)
chr3 (211-259)||(11343830-11343878)
chr3 (211-259)||(19866731-19866779)
[»] scaffold0041 (2 HSPs)
scaffold0041 (72-257)||(23487-23672)
scaffold0041 (11-88)||(23605-23682)
[»] chr1 (16 HSPs)
chr1 (72-257)||(49030232-49030418)
chr1 (11-90)||(49030349-49030428)
chr1 (97-257)||(28446449-28446608)
chr1 (211-257)||(11821160-11821206)
chr1 (212-257)||(39650196-39650241)
chr1 (134-258)||(33401407-33401531)
chr1 (134-258)||(33617643-33617767)
chr1 (212-258)||(49033763-49033809)
chr1 (212-257)||(5119064-5119109)
chr1 (223-259)||(3792498-3792534)
chr1 (211-259)||(45688306-45688354)
chr1 (211-257)||(3792560-3792606)
chr1 (212-258)||(28476015-28476061)
chr1 (211-257)||(45691080-45691126)
chr1 (211-257)||(45691222-45691268)
chr1 (211-257)||(45691364-45691410)
[»] chr6 (8 HSPs)
chr6 (11-130)||(25403890-25404009)
chr6 (72-229)||(25403900-25404057)
chr6 (94-259)||(17436456-17436621)
chr6 (125-257)||(24326944-24327076)
chr6 (212-257)||(807202-807247)
chr6 (212-257)||(31522568-31522613)
chr6 (212-257)||(32275804-32275849)
chr6 (212-258)||(14153353-14153399)
[»] chr5 (6 HSPs)
chr5 (125-257)||(36933168-36933300)
chr5 (134-258)||(28677885-28678009)
chr5 (73-251)||(6705929-6706107)
chr5 (212-256)||(4845302-4845346)
chr5 (212-259)||(1145139-1145186)
chr5 (212-257)||(34016002-34016047)
[»] scaffold1763 (1 HSPs)
scaffold1763 (211-261)||(396-446)
[»] scaffold1063 (1 HSPs)
scaffold1063 (211-257)||(1475-1521)


Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 301
Target Start/End: Complemental strand, 44552272 - 44551982
Alignment:
Q  11 cagagacagaactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgc 110  Q
    |||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44552272 cagagacagaactagcatgacttaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagttaagtaacgtgacttaagttgc 44552173  T
Q  111 gtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggta 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||     
T  44552172 gtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaaggataaaaaggtc 44552073  T
Q  211 ttttactttaggaatgagcgaaaccatttggataatgagcagaattctttgtcttgaacctatttgctggatcttcttgttctaagaataa 301  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  44552072 ttttattttaagaatgagcgaaaccatttggataatgagcagaattctttgtcttgaacctatttgctggatcttcttgttttaagaataa 44551982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 254
Target Start/End: Original strand, 5127 - 5247
Alignment:
Q  134 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaa 233  Q
    |||||||||||| | | |||||||| |||||  ||||||||||||||||||||||  |||||| |||      |||  |||||||| ||||||||||||     
T  5127 ttaagtcacgctgcttatcttaagttacgttataatttgcactagcgcatgttaacatgcgtaggggcatttcggtcatttactttgggaatgagcgaat 5226  T
Q  234 ccatttggataatgagcagaa 254  Q
    |||||||| ||||||||||||    
T  5227 ccatttgggtaatgagcagaa 5247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 5060894 - 5060846
Alignment:
Q  211 ttttactttaggaatgagcgaaaccatttggataatgagcagaattctt 259  Q
    ||||||||| |||||||||| |||||||||||||||||| |||||||||    
T  5060894 ttttactttgggaatgagcggaaccatttggataatgagtagaattctt 5060846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 258
Target Start/End: Complemental strand, 38790918 - 38790883
Alignment:
Q  223 aatgagcgaaaccatttggataatgagcagaattct 258  Q
    ||||||||||||||||||||||||||||||||||||    
T  38790918 aatgagcgaaaccatttggataatgagcagaattct 38790883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 38386295 - 38386178
Alignment:
Q  136 aagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaacc 235  Q
    |||||||||||| | |||||||| |||||  ||||||||||||||||||||||  |||||| |||        |  |||||||| | |||||||||| ||    
T  38386295 aagtcacgctacttatcttaagttacgttataatttgcactagcgcatgttaacatgcgtaggggcatttcaatcatttactttggaaatgagcgaatcc 38386196  T
Q  236 atttggataatgagcaga 253  Q
    ||||||||||||||||||    
T  38386195 atttggataatgagcaga 38386178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 20379700 - 20379748
Alignment:
Q  211 ttttactttaggaatgagcgaaaccatttggataatgagcagaattctt 259  Q
    ||||||||| |||||||||| |||||||| ||||||||||| |||||||    
T  20379700 ttttactttgggaatgagcggaaccatttagataatgagcataattctt 20379748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 42548207 - 42548159
Alignment:
Q  211 ttttactttaggaatgagcgaaaccatttggataatgagcagaattctt 259  Q
    ||||||||| ||||||||| |||| |||||| |||||||||||||||||    
T  42548207 ttttactttgggaatgagcaaaacgatttgggtaatgagcagaattctt 42548159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 38047769 - 38047715
Alignment:
Q  134 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaa 188  Q
    |||||||||||||| | |||||||| |||||  |||||| |||||||||||||||    
T  38047769 ttaagtcacgctacttatcttaagttacgttataatttgtactagcgcatgttaa 38047715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 33839475 - 33839520
Alignment:
Q  212 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    ||||||||  ||||||||||| |||||||||||| |||||||||||    
T  33839475 tttactttgagaatgagcgaatccatttggataaagagcagaattc 33839520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 181; Significance: 9e-98; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 21 - 257
Target Start/End: Complemental strand, 628324 - 628088
Alignment:
Q  21 actagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatatt 120  Q
    ||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  628324 actagtgtgacttaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgtgtttcatatt 628225  T
Q  121 gcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttacttta 220  Q
    ||| |||||| ||||||||||| |||||||||||||||||| || ||||||| |||||||||||||||||||||||||||| |||| || ||||||||||    
T  628224 gcactagcgttacttaagtcactctacctgtcttaagtcacattccaatttgaactagcgcatgttaagttgcgtaagggtaaaaaagtcttttacttta 628125  T
Q  221 ggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    ||||||||||||||||||||| |||||||||||||||    
T  628124 ggaatgagcgaaaccatttgggtaatgagcagaattc 628088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 22 - 251
Target Start/End: Original strand, 40923737 - 40923966
Alignment:
Q  22 ctagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattg 121  Q
    ||||||||||||||||||||||| ||||||||  ||||||| |||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||    
T  40923737 ctagcgtgacttaagtcaagcaacgtgacttaaattgcgttaaattttgcactagcgtgatttaagtcaagtaacgtgacttaagttgtatttcatattg 40923836  T
Q  122 cattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttag 221  Q
    || ||||||||||||||||||||||||||||||||||||| || |||||| || ||||||||||||||||| |||||| | ||||||| |||||||||||    
T  40923837 cactagcgtgacttaagtcacgctacctgtcttaagtcacattccaatttacattagcgcatgttaagttgtgtaaggataaaaaggtcttttactttag 40923936  T
Q  222 gaatgagcgaaaccatttggataatgagca 251  Q
    |||||||||||||||||||| |||||||||    
T  40923937 gaatgagcgaaaccatttgggtaatgagca 40923966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 98 - 257
Target Start/End: Original strand, 37577159 - 37577318
Alignment:
Q  98 tgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaa 197  Q
    |||||||||||||||||||| |||||||||  |||||||||||| |||||||||||||| ||||||  || ||| |||||||||| ||||||||||||||    
T  37577159 tgacttaagttgcgtttcattttgcattagtatgacttaagtcatgctacctgtcttaaatcacgtaccattttacactagcgcaagttaagttgcgtaa 37577258  T
Q  198 gggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    |||| ||||| | |||||||||||||||||||||||  ||||||||||||||||||||||    
T  37577259 gggtaaaaagatcttttactttaggaatgagcgaaattatttggataatgagcagaattc 37577318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 119 - 259
Target Start/End: Complemental strand, 37031047 - 37030907
Alignment:
Q  119 ttgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactt 218  Q
    ||||| |||||||||||||||||||||| || |||||||||||||| ||||||||| | |||||| |||| ||| |||||||| ||||||| ||||||||    
T  37031047 ttgcactagcgtgacttaagtcacgctatctatcttaagtcacgttccaatttgcatttgcgcatattaaattgtgtaagggtaaaaaggtcttttactt 37030948  T
Q  219 taggaatgagcgaaaccatttggataatgagcagaattctt 259  Q
    | ||||||||| ||| ||||||| |||||| || |||||||    
T  37030947 tgggaatgagcaaaatcatttgggtaatgaccataattctt 37030907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 628329 - 628255
Alignment:
Q  67 tttgcactagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtca 141  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||| || ||||| |||||||||||||||||    
T  628329 tttgcactagtgtgacttaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagtca 628255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 254
Target Start/End: Original strand, 24974101 - 24974221
Alignment:
Q  134 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaa 233  Q
    |||||||||||||| | |||||||| || ||  ||||||||||||||||||||||  |||||| |||      |||  |||||||| ||||||||| ||     
T  24974101 ttaagtcacgctacttatcttaagttacattataatttgcactagcgcatgttaacatgcgtaggggcatttcggtcatttactttgggaatgagcaaat 24974200  T
Q  234 ccatttggataatgagcagaa 254  Q
    |||||||||||||||||||||    
T  24974201 ccatttggataatgagcagaa 24974221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 40923787 - 40923856
Alignment:
Q  21 actagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtca 90  Q
    |||||||||| |||||||||| || |||||||| ||||  ||| || |||||||||||||||||||||||    
T  40923787 actagcgtgatttaagtcaagtaacgtgacttaagttgtatttcatattgcactagcgtgacttaagtca 40923856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 73 - 257
Target Start/End: Original strand, 51719668 - 51719852
Alignment:
Q  73 ctagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttg 172  Q
    ||||||||  |||||||| | |||||||||||||||||||| ||| ||| | || ||||| ||||||||||| || | | ||| || |||||  |||||     
T  51719668 ctagcgtggtttaagtcacgcaacgtgacttaagttgcgttacattttgtactaacgtgagttaagtcacgcaacatatgttacgttacgttgtaattta 51719767  T
Q  173 cactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    || || |||||||||| || |||| ||||     |||  |||||||| | ||| |||||| |||||||| |||| ||||||||||    
T  51719768 cattaacgcatgttaacttacgtaggggtatttcggttatttactttggaaataagcgaatccatttgggtaataagcagaattc 51719852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 188
Target Start/End: Original strand, 12586753 - 12586807
Alignment:
Q  134 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaa 188  Q
    |||||||||||||| | |||||||| |||||  ||||||||||||||||||||||    
T  12586753 ttaagtcacgctacttatcttaagttacgttataatttgcactagcgcatgttaa 12586807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 34235737 - 34235782
Alignment:
Q  212 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    ||||||||||||||||||| |||||||||| ||||||||| |||||    
T  34235737 tttactttaggaatgagcggaaccatttgggtaatgagcataattc 34235782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 257
Target Start/End: Original strand, 55527868 - 55527991
Alignment:
Q  134 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaa 233  Q
    |||||||||||||| | |||||||| |||||  ||||||||||||||| ||||||  |||||| |||      |||  ||| |||| | ||||||||||     
T  55527868 ttaagtcacgctacttatcttaagttacgttataatttgcactagcgcgtgttaacatgcgtaggggcatttcggtcatttgctttggaaatgagcgaat 55527967  T
Q  234 ccatttggataatgagcagaattc 257  Q
    ||||||  ||||||||||||||||    
T  55527968 ccatttaaataatgagcagaattc 55527991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 240
Target Start/End: Complemental strand, 53265839 - 53265809
Alignment:
Q  210 attttactttaggaatgagcgaaaccatttg 240  Q
    |||||||||||||||||||||||||||||||    
T  53265839 attttactttaggaatgagcgaaaccatttg 53265809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 33164538 - 33164583
Alignment:
Q  212 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    ||||||||  ||||||||| |||||||||| |||||||||||||||    
T  33164538 tttactttgagaatgagcggaaccatttgggtaatgagcagaattc 33164583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 54208225 - 54208180
Alignment:
Q  212 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    |||||||| ||||||||| ||||||||||||||| ||||| |||||    
T  54208225 tttactttgggaatgagcaaaaccatttggataaagagcataattc 54208180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 178; Significance: 5e-96; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 14 - 259
Target Start/End: Original strand, 9387765 - 9388010
Alignment:
Q  14 agacagaactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgcgtt 113  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  9387765 agacagaactagcgtgacttaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgcatt 9387864  T
Q  114 tcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattt 213  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| |||| ||||||| ||||||| |||    
T  9387865 tcatattgcactagcgtgacttaagtcatgctacctgtcttaagtcacgttccaatttgcactaacgcatgttaaattgcataagggtaaaaaggtcttt 9387964  T
Q  214 tactttaggaatgagcgaaaccatttggataatgagcagaattctt 259  Q
    || ||| ||||||||| ||||||||| | ||||||| |||||||||    
T  9387965 tattttgggaatgagcaaaaccatttaggtaatgagtagaattctt 9388010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 75 - 257
Target Start/End: Complemental strand, 9418769 - 9418587
Alignment:
Q  75 agcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgca 174  Q
    |||||||||||||||||||||| ||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9418769 agcgtgacttaagtcaagtaacatgacttaagttgcgtgtcattttgcactagcgtgacttaagtcacgctacctgtcttaagtcacgttccaatttgca 9418670  T
Q  175 ctagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    || |||||||||||||||||||||||| ||| ||| ||||||||| ||||||||||||||||||||| |||||||||||||||    
T  9418669 cttgcgcatgttaagttgcgtaagggtaaaatggtcttttactttgggaatgagcgaaaccatttgggtaatgagcagaattc 9418587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 9418775 - 9418703
Alignment:
Q  18 agaactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtca 90  Q
    ||||| |||||||||||||||||| ||  ||||||| ||||||| | ||||||||||||||||||||||||||    
T  9418775 agaaccagcgtgacttaagtcaagtaacatgacttaagttgcgtgtcattttgcactagcgtgacttaagtca 9418703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 258
Target Start/End: Original strand, 5967192 - 5967316
Alignment:
Q  134 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaa 233  Q
    ||||||||| |||| | |||||||| |||||  ||||||||||||||||||||||  |||||| |||      | |  |||||||| ||||||||||||     
T  5967192 ttaagtcacactacttatcttaagttacgttataatttgcactagcgcatgttaacatgcgtaggggcatttcgatcatttactttgggaatgagcgaat 5967291  T
Q  234 ccatttggataatgagcagaattct 258  Q
    |||||||| ||||||||||||||||    
T  5967292 ccatttgggtaatgagcagaattct 5967316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 257
Target Start/End: Original strand, 33220819 - 33220865
Alignment:
Q  211 ttttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    ||||||||| |||||||| |||||||||||| |||||||||||||||    
T  33220819 ttttactttgggaatgagtgaaaccatttgggtaatgagcagaattc 33220865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 31762286 - 31762241
Alignment:
Q  212 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    |||||||| |||||||||||| ||||||| ||||||||||||||||    
T  31762286 tttactttgggaatgagcgaatccatttgaataatgagcagaattc 31762241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 33220068 - 33220024
Alignment:
Q  212 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||    
T  33220068 tttacttt-ggaatgagcggaaccatttggataatgagcagaattc 33220024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 258
Target Start/End: Original strand, 23559027 - 23559062
Alignment:
Q  223 aatgagcgaaaccatttggataatgagcagaattct 258  Q
    |||||||| |||||||||||||||||||||||||||    
T  23559027 aatgagcggaaccatttggataatgagcagaattct 23559062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 257
Target Start/End: Original strand, 34279516 - 34279639
Alignment:
Q  134 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaa 233  Q
    |||||||||||||| | |||||||| |||||  ||||||||||| ||||||||||  || ||| |||      | |  |||||||||||||||||||||     
T  34279516 ttaagtcacgctacttatcttaagttacgttataatttgcactaacgcatgttaacatgtgtaggggcatttcgatcatttactttaggaatgagcgaat 34279615  T
Q  234 ccatttggataatgagcagaattc 257  Q
    ||||||   |||||||||||||||    
T  34279616 ccatttaagtaatgagcagaattc 34279639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 43641006 - 43641051
Alignment:
Q  212 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    |||||||| | ||||||| ||||||||||| |||||||||||||||    
T  43641006 tttactttggaaatgagccaaaccatttgggtaatgagcagaattc 43641051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 9448729 - 9448769
Alignment:
Q  211 ttttactttaggaatgagcgaaaccatttggataatgagca 251  Q
    |||||||||  ||||||| ||||||||||||||||||||||    
T  9448729 ttttactttgagaatgagtgaaaccatttggataatgagca 9448769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 3e-91; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 20 - 253
Target Start/End: Original strand, 25678729 - 25678962
Alignment:
Q  20 aactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatat 119  Q
    ||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  25678729 aactagcgtgactcaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtaacttaagttgtgtttcatat 25678828  T
Q  120 tgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttacttt 219  Q
    |||| ||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||| |||||||| ||||||| |||||||||    
T  25678829 tgcactagcgtgacttaagtcacgctacatgtcttaagtcacgttccaatttgcacaagcgcatgttaagttgtgtaagggtaaaaaggtcttttacttt 25678928  T
Q  220 aggaatgagcgaaaccatttggataatgagcaga 253  Q
     ||||| ||||||||||||| | |||||||||||    
T  25678929 gggaatcagcgaaaccattttggtaatgagcaga 25678962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 21 - 257
Target Start/End: Original strand, 24929175 - 24929411
Alignment:
Q  21 actagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatatt 120  Q
    ||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24929175 actagtgtgacttaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgtgtttcatatt 24929274  T
Q  121 gcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttacttta 220  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||| | || |||||||||||||||||| | ||||| | |||||||||     
T  24929275 gcactagagtgacttaagtcacgctacctgtcttaagtcacgtttcaatttacacaaacgtatgttaagttgcgtaaggataaaaagatcttttactttg 24929374  T
Q  221 ggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    ||||| ||||||||||||| | |||||||||||||||    
T  24929375 ggaatcagcgaaaccattttggtaatgagcagaattc 24929411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 72 - 257
Target Start/End: Original strand, 943137 - 943321
Alignment:
Q  72 actagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaattt 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  943137 actagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcactagcgtgacttaagtcacgctacctgtcttaagtcacgttccaattt 943236  T
Q  172 gcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    |||| ||||||||||||||||||||||||| |||| || |||||||||| |||||||||||||||| |||||||||| ||||||||    
T  943237 gcac-agcgcatgttaagttgcgtaagggtaaaaaagtcttttactttatgaatgagcgaaaccatctggataatgaacagaattc 943321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 943128 - 943206
Alignment:
Q  12 agagacagaactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtca 90  Q
    |||||||||||||||||||||||||||||| || |||||||| ||||||||| || |||||||||||||||||||||||    
T  943128 agagacagaactagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcactagcgtgacttaagtca 943206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 24929169 - 24929244
Alignment:
Q  66 ttttgcactagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtca 141  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||||| || ||||| |||||||||||||||||    
T  24929169 ttttgtactagtgtgacttaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagtca 24929244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 257
Target Start/End: Original strand, 37893040 - 37893086
Alignment:
Q  211 ttttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    ||||||||| ||||||||||||||||||||| |||| ||||||||||    
T  37893040 ttttactttgggaatgagcgaaaccatttgggtaattagcagaattc 37893086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 8273290 - 8273245
Alignment:
Q  212 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    |||||||| |||||||||||| |||||||| |||||||||||||||    
T  8273290 tttactttgggaatgagcgaatccatttgggtaatgagcagaattc 8273245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 20685052 - 20685004
Alignment:
Q  211 ttttactttaggaatgagcgaaaccatttggataatgagcagaattctt 259  Q
    |||||||||  ||||||||| |||||||||| |||||||||||||||||    
T  20685052 ttttactttgagaatgagcggaaccatttgggtaatgagcagaattctt 20685004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 259
Target Start/End: Complemental strand, 38225774 - 38225727
Alignment:
Q  212 tttactttaggaatgagcgaaaccatttggataatgagcagaattctt 259  Q
    |||||||||||||||| |||||| ||||| ||||||||| ||||||||    
T  38225774 tttactttaggaatgaacgaaacaatttgaataatgagctgaattctt 38225727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 257
Target Start/End: Original strand, 20686834 - 20686880
Alignment:
Q  211 ttttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    |||||||||||||||||||| || |||||| |||| |||||||||||    
T  20686834 ttttactttaggaatgagcggaaacatttgaataacgagcagaattc 20686880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 12969296 - 12969340
Alignment:
Q  211 ttttactttaggaatgagcgaaaccatttggataatgagcagaatt 256  Q
    ||||||||| |||||||||| |||||||| ||||||||||||||||    
T  12969296 ttttacttt-ggaatgagcggaaccatttagataatgagcagaatt 12969340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 12967316 - 12967268
Alignment:
Q  211 ttttactttaggaatgagcgaaaccatttggataatgagcagaattctt 259  Q
    |||||||||  ||||||||| |||||||| | |||||||||||||||||    
T  12967316 ttttactttgagaatgagcggaaccatttaggtaatgagcagaattctt 12967268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 47 - 259
Target Start/End: Original strand, 2721 - 2933
Alignment:
Q  47 tgacttacgttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgcta 146  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| ||||    
T  2721 tgacttaagttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtggcttaagttgcgtttcttattgcactagcgtgacttaagtcatgcta 2820  T
Q  147 cctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataat 246  Q
    ||||||||||||||  || |||||||||||||||||||||||||||| ||||||| ||||||| ||||| |||  |||||||||||||||||||| ||||    
T  2821 cctgtcttaagtcattttccaatttgcactagcgcatgttaagttgcataagggtaaaaaggtcttttattttgagaatgagcgaaaccatttgggtaat 2920  T
Q  247 gagcagaattctt 259  Q
    |||||||||||||    
T  2921 gagcagaattctt 2933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 2746 - 2815
Alignment:
Q  21 actagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtca 90  Q
    ||||||||||||||||||||| || ||| |||| |||||||||  | |||||||||||||||||||||||    
T  2746 actagcgtgacttaagtcaagtaacgtggcttaagttgcgtttcttattgcactagcgtgacttaagtca 2815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 72 - 258
Target Start/End: Complemental strand, 44430603 - 44430417
Alignment:
Q  72 actagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaattt 171  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| ||||||||||||||||||||||| ||||||    
T  44430603 actagcgtgacttaagtcaagtaacgtgacttaagttgcatttcattttgcactagcgtgacttaagtcgcgctacctgtcttaagtcacgttccaattt 44430504  T
Q  172 gcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattct 258  Q
    |||||||||||||||||||||||||||||| ||| | | ||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  44430503 gcactagcgcatgttaagttgcgtaagggtaaaatgatcttttactttgggaatgagcaaaaccatttggataatgagcagaattct 44430417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 72 - 185
Target Start/End: Original strand, 13840617 - 13840730
Alignment:
Q  72 actagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaattt 171  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||     
T  13840617 actagcgtgacttaagtcaagtaacgtgatttaagttacgtttcattttgcactagcgtgacttaagtcacgctacctgtcttaagtcacgttccaattg 13840716  T
Q  172 gcactagcgcatgt 185  Q
    |||||||| |||||    
T  13840717 gcactagcacatgt 13840730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 77 - 257
Target Start/End: Complemental strand, 3860445 - 3860246
Alignment:
Q  77 cgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacg-------------- 162  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||                  
T  3860445 cgtgacttaagtctagtaacgtgacttaagttacgtttcatattgcactagcgtgacttaagtcacgctacctgccttaagtcacgctacctgccttaag 3860346  T
Q  163 -----tttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
         ||||||||| ||||||||||| ||||||||||||||||| ||||  | ||||| |||  ||||||||||||||||||||||||||| ||||||||    
T  3860345 tcacgtttcaatttacactagcgcatattaagttgcgtaagggtaaaaatatcttttattttgagaatgagcgaaaccatttggataatgaacagaattc 3860246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 125 - 240
Target Start/End: Original strand, 50664131 - 50664246
Alignment:
Q  125 tagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaa 224  Q
    |||| |||||||||| |||||||||||||||| ||||||  || |||||||||||||| |||||||||||||| ||| ||||||| ||||||||||| ||    
T  50664131 tagcatgacttaagttacgctacctgtcttaaatcacgtaccattttgcactagcgcaagttaagttgcgtaaaggtaaaaaggtcttttactttagaaa 50664230  T
Q  225 tgagcgaaaccatttg 240  Q
    ||||||||||||||||    
T  50664231 tgagcgaaaccatttg 50664246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 72 - 257
Target Start/End: Complemental strand, 39685378 - 39685212
Alignment:
Q  72 actagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaattt 171  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||  ||||||||||||||                   |||||| ||||||    
T  39685378 actagcgtgacttaagtcaagtaacgtgacttaagtttcgtttcattttgcaccagcgtgacttaagt-------------------cacgttccaattt 39685298  T
Q  172 gcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    |||||||||| ||||||||||||||||||| ||| ||| |||||||||   ||||||||||||||||||| ||||||||| |||||    
T  39685297 gcactagcgcgtgttaagttgcgtaagggtaaaatggtcttttactttgaaaatgagcgaaaccatttgggtaatgagcaaaattc 39685212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 72 - 258
Target Start/End: Original strand, 53814454 - 53814640
Alignment:
Q  72 actagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaattt 171  Q
    |||||||||  |||||||| |||||||||||||||||||||| ||| ||| |  || |||| ||||||||||  || | | |||||| |||||| |||||    
T  53814454 actagcgtggtttaagtcacgtaacgtgacttaagttgcgttccattttgtaccagtgtgagttaagtcacgtaacgtatgttaagttacgttttaattt 53814553  T
Q  172 gcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattct 258  Q
    |||||||||||| ||||  |||||| |||      | |  |||||||| |||||||||||| |||||||| ||||||||||||||||    
T  53814554 gcactagcgcatattaacatgcgtaggggcattttgatcatttactttgggaatgagcgaatccatttgggtaatgagcagaattct 53814640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 13840613 - 13840686
Alignment:
Q  17 cagaactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtca 90  Q
    ||||||||||||||||||||||||| || |||| ||| ||| ||||| ||||||||||||||||||||||||||    
T  13840613 cagaactagcgtgacttaagtcaagtaacgtgatttaagttacgtttcattttgcactagcgtgacttaagtca 13840686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 39685382 - 39685309
Alignment:
Q  17 cagaactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtca 90  Q
    ||||||||||||||||||||||||| || |||||||| ||| ||||| ||||||||| ||||||||||||||||    
T  39685382 cagaactagcgtgacttaagtcaagtaacgtgacttaagtttcgtttcattttgcaccagcgtgacttaagtca 39685309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 89
Target Start/End: Complemental strand, 44430604 - 44430535
Alignment:
Q  20 aactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtc 89  Q
    |||||||||||||||||||||| || |||||||| ||||| ||| |||||||||||||||||||||||||    
T  44430604 aactagcgtgacttaagtcaagtaacgtgacttaagttgcatttcattttgcactagcgtgacttaagtc 44430535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 256
Target Start/End: Original strand, 13843595 - 13843670
Alignment:
Q  181 catgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaatt 256  Q
    ||||||||||||| ||||||| ||| | | ||||||||| ||||||||||||||||||||| ||||||||||||||    
T  13843595 catgttaagttgcttaagggtaaaatgatcttttactttgggaatgagcgaaaccatttgggtaatgagcagaatt 13843670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 3860445 - 3860381
Alignment:
Q  26 cgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtca 90  Q
    ||||||||||||| || || |||||||| ||| ||||| || |||||||||||||||||||||||    
T  3860445 cgtgacttaagtctagtaacgtgacttaagttacgtttcatattgcactagcgtgacttaagtca 3860381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 15040726 - 15040678
Alignment:
Q  212 tttactttaggaatgagcgaaaccatttggataatgagcagaattcttt 260  Q
    |||||||| |||||||||||| |||||||| ||||||||||||||||||    
T  15040726 tttactttgggaatgagcgaatccatttgggtaatgagcagaattcttt 15040678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 258
Target Start/End: Complemental strand, 4969921 - 4969874
Alignment:
Q  211 ttttactttaggaatgagcgaaaccatttggataatgagcagaattct 258  Q
    ||||||||| |||||||||| |||||||||| ||||||||||||||||    
T  4969921 ttttactttgggaatgagcggaaccatttgggtaatgagcagaattct 4969874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 259
Target Start/End: Original strand, 21566895 - 21567029
Alignment:
Q  125 tagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaag-gtattttactttagga 223  Q
    |||||||||||||||||| |||| |  |||||| || ||  | ||||| ||||||| |||||||||  ||||||||| ||||| |||||| || || |||    
T  21566895 tagcgtgacttaagtcacactacgttacttaagccatgtagctatttgtactagcgtatgttaagtcacgtaagggtaaaaagagtattt-acattggga 21566993  T
Q  224 atgagcgaaaccatttggataatgagcagaattctt 259  Q
    |||||  ||| ||||||| ||| |||||||||||||    
T  21566994 atgagaaaaatcatttgggtaaagagcagaattctt 21567029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 259
Target Start/End: Original strand, 44836511 - 44836558
Alignment:
Q  212 tttactttaggaatgagcgaaaccatttggataatgagcagaattctt 259  Q
    |||||||||| |||||||| |||||||| |||||||||||||||||||    
T  44836511 tttactttagaaatgagcggaaccatttagataatgagcagaattctt 44836558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 257
Target Start/End: Original strand, 6162714 - 6162760
Alignment:
Q  211 ttttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    ||||||||| |||||||||| |||||||||| |||||||||||||||    
T  6162714 ttttactttgggaatgagcggaaccatttgggtaatgagcagaattc 6162760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 7665856 - 7665802
Alignment:
Q  134 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaa 188  Q
    |||||||||||||| | |||||||| |||||  ||||||||||||||||||||||    
T  7665856 ttaagtcacgctacttatcttaagttacgttataatttgcactagcgcatgttaa 7665802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 16931491 - 16931441
Alignment:
Q  212 tttactttaggaatgagcgaaaccatttggataatgagcagaattctttgt 262  Q
    ||||||||||||| |||||| || ||||| |||||||||||||||||||||    
T  16931491 tttactttaggaacgagcgatactatttgaataatgagcagaattctttgt 16931441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 40517556 - 40517601
Alignment:
Q  212 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||||    
T  40517556 tttactttaggaatgagcgaaaccgtttgggtaaagagcagaattc 40517601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 259
Target Start/End: Original strand, 26998320 - 26998367
Alignment:
Q  212 tttactttaggaatgagcgaaaccatttggataatgagcagaattctt 259  Q
    |||| ||||| ||||||||||||||||||||| | |||||||||||||    
T  26998320 tttattttagaaatgagcgaaaccatttggatgaagagcagaattctt 26998367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 3860479 - 3860437
Alignment:
Q  11 cagagacagaactagcgtgacttaagtcaagcaaagtgactta 53  Q
    ||||||||||||||| ||| |||||||||||||| ||||||||    
T  3860479 cagagacagaactagtgtgccttaagtcaagcaacgtgactta 3860437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 35069479 - 35069524
Alignment:
Q  212 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    |||||||||| ||||| |||| |||||| |||||||||||||||||    
T  35069479 tttactttagaaatgaacgaatccatttagataatgagcagaattc 35069524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 35485288 - 35485243
Alignment:
Q  212 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    ||||||||| |||||||||| ||  |||||||||||||||||||||    
T  35485288 tttactttaagaatgagcgatactgtttggataatgagcagaattc 35485243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 2325593 - 2325641
Alignment:
Q  211 ttttactttaggaatgagcgaaaccatttggataatgagcagaattctt 259  Q
    ||||||||| ||||||  ||||||||||| |||||||| ||||||||||    
T  2325593 ttttactttgggaatggacgaaaccatttagataatgaccagaattctt 2325641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 11343830 - 11343878
Alignment:
Q  211 ttttactttaggaatgagcgaaaccatttggataatgagcagaattctt 259  Q
    |||||||||  || |||||| ||||||||| ||||||||||||||||||    
T  11343830 ttttactttgagagtgagcggaaccatttgaataatgagcagaattctt 11343878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 19866779 - 19866731
Alignment:
Q  211 ttttactttaggaatgagcgaaaccatttggataatgagcagaattctt 259  Q
    ||||||||| ||||||||||| ||  ||||| |||||||||||||||||    
T  19866779 ttttactttgggaatgagcgatactgtttgggtaatgagcagaattctt 19866731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 72 - 257
Target Start/End: Complemental strand, 23672 - 23487
Alignment:
Q  72 actagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaattt 171  Q
    |||||||||||||||||||| |||||||||||||||||| ||| || ||||| ||||||||||||||| |||||||||||||||||||||||| ||||||    
T  23672 actagcgtgacttaagtcaaataacgtgacttaagttgcatttaattttgcactagcgtgacttaagtgacgctacctgtcttaagtcacgttccaattt 23573  T
Q  172 gcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    ||||||||||||||||||||| |||||||| ||||||| |||||||||  |||||||| |||||||||| ||||||||||||||||    
T  23572 gcactagcgcatgttaagttgtgtaagggtaaaaaggtcttttactttgagaatgagcaaaaccatttgaataatgagcagaattc 23487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 23682 - 23605
Alignment:
Q  11 cagagacagaactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagt 88  Q
    ||||||||||||||||||||||||||||||  || |||||||| ||||| ||||||||||||||||||||||||||||    
T  23682 cagagacagaactagcgtgacttaagtcaaataacgtgacttaagttgcatttaattttgcactagcgtgacttaagt 23605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 9e-61; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 72 - 257
Target Start/End: Complemental strand, 49030418 - 49030232
Alignment:
Q  72 actagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaattt 171  Q
    ||||||||||||||||||||| ||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||| ||||||    
T  49030418 actagcgtgacttaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagtcaggctacctgtcttaagtcacgttccaattt 49030319  T
Q  172 gcactagcgcatgttaagttgcgtaagg-gtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    |||||||||| ||||||||||||||||| || |||| || ||||||||| |||||||||||||||||||  |||  |||||||||||    
T  49030318 gcactagcgcgtgttaagttgcgtaaggtgtaaaaatgtgttttactttgggaatgagcgaaaccatttaaatacagagcagaattc 49030232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 49030428 - 49030349
Alignment:
Q  11 cagagacagaactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtca 90  Q
    |||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  49030428 cagagacataactagcgtgacttaagtcaagcaacgtgacttaagttgcgtttaattttgcactagcgtgacttaagtca 49030349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 97 - 257
Target Start/End: Original strand, 28446449 - 28446608
Alignment:
Q  97 gtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgta 196  Q
    ||||||||||||||||| ||| ||| | |||||||| ||||||||||| || ||| |||||| |||||  || ||| |||||||||||||||  ||||||    
T  28446449 gtgacttaagttgcgttacattttgtactagcgtgagttaagtcacgcaacgtgtgttaagttacgttgtaa-ttgtactagcgcatgttaacatgcgta 28446547  T
Q  197 agggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
     |||       ||  |||||||| |||||||||||| |||||||| ||||||||| |||||    
T  28446548 ggggcatttcagtcatttactttgggaatgagcgaatccatttgggtaatgagcaaaattc 28446608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 11821206 - 11821160
Alignment:
Q  211 ttttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    ||||||||| ||||||| |||||||||||||||||||||||||||||    
T  11821206 ttttactttgggaatgaacgaaaccatttggataatgagcagaattc 11821160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 39650241 - 39650196
Alignment:
Q  212 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    |||||||||||||||||||||||||||| | |||||||||||||||    
T  39650241 tttactttaggaatgagcgaaaccatttaggtaatgagcagaattc 39650196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 134 - 258
Target Start/End: Complemental strand, 33401531 - 33401407
Alignment:
Q  134 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaa 233  Q
    |||||||||||||| | |||||||| |||||  ||||||||||||||||||||||  ||| ||||||      |||  ||||||||  |||||||||||     
T  33401531 ttaagtcacgctacttatcttaagttacgttataatttgcactagcgcatgttaacatgcataagggcatttcggtcatttactttgagaatgagcgaat 33401432  T
Q  234 ccatttggataatgagcagaattct 258  Q
    |||||||  ||||||||| ||||||    
T  33401431 ccatttgactaatgagcaaaattct 33401407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 134 - 258
Target Start/End: Complemental strand, 33617767 - 33617643
Alignment:
Q  134 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaa 233  Q
    |||||||||||||| | |||||||| |||||  ||||||||||||||||||||||  ||| || |||      |||  ||||||||  |||||||||||     
T  33617767 ttaagtcacgctacttatcttaagttacgttataatttgcactagcgcatgttaacatgcataggggcatttcggtcatttactttgagaatgagcgaat 33617668  T
Q  234 ccatttggataatgagcagaattct 258  Q
    |||||||| ||||||||| ||||||    
T  33617667 ccatttgggtaatgagcataattct 33617643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 49033763 - 49033809
Alignment:
Q  212 tttactttaggaatgagcgaaaccatttggataatgagcagaattct 258  Q
    |||||||| |||||||||| ||||||||| |||||||||||||||||    
T  49033763 tttactttgggaatgagcggaaccatttgaataatgagcagaattct 49033809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 5119064 - 5119109
Alignment:
Q  212 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    |||||||||||||||||| ||||| ||||||||| |||||||||||    
T  5119064 tttactttaggaatgagcaaaaccgtttggataaagagcagaattc 5119109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 3792498 - 3792534
Alignment:
Q  223 aatgagcgaaaccatttggataatgagcagaattctt 259  Q
    ||||||||||||||||||||||||||||| |||||||    
T  3792498 aatgagcgaaaccatttggataatgagcataattctt 3792534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 45688354 - 45688306
Alignment:
Q  211 ttttactttaggaatgagcgaaaccatttggataatgagcagaattctt 259  Q
    ||||||||| |||||||||  ||||||||||||||||||| ||||||||    
T  45688354 ttttactttgggaatgagcagaaccatttggataatgagcggaattctt 45688306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 3792606 - 3792560
Alignment:
Q  211 ttttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    ||||||||| | |||||||||||| |||||| |||||||||||||||    
T  3792606 ttttactttggaaatgagcgaaactatttgggtaatgagcagaattc 3792560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 28476015 - 28476061
Alignment:
Q  212 tttactttaggaatgagcgaaaccatttggataatgagcagaattct 258  Q
    ||||||||  ||||||||| |||||||||| ||||||||||||||||    
T  28476015 tttactttgagaatgagcggaaccatttgggtaatgagcagaattct 28476061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 257
Target Start/End: Original strand, 45691080 - 45691126
Alignment:
Q  211 ttttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    ||||||||| ||||||||||||||||||||  ||||||||| |||||    
T  45691080 ttttactttgggaatgagcgaaaccatttgagtaatgagcaaaattc 45691126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 257
Target Start/End: Original strand, 45691222 - 45691268
Alignment:
Q  211 ttttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    ||||||||| ||||||||||||||||||||  ||||||||| |||||    
T  45691222 ttttactttgggaatgagcgaaaccatttgagtaatgagcaaaattc 45691268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 257
Target Start/End: Original strand, 45691364 - 45691410
Alignment:
Q  211 ttttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    ||||||||| ||||||||||||||||||||  ||||||||| |||||    
T  45691364 ttttactttgggaatgagcgaaaccatttgagtaatgagcaaaattc 45691410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 100; Significance: 2e-49; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 25403890 - 25404009
Alignment:
Q  11 cagagacagaactagcgtgacttaagtcaagcaaagtgacttacgttgcgtttaattttgcactagcgtgacttaagtcaagtaacgtgacttaagttgc 110  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25403890 cagagacagaactagcgtgacttaagtcaagcaacgtgacttaagttgcgtttaattttgaactagcgtgacttaagtcaagtaacgtgacttaagttgc 25403989  T
Q  111 gtttcatattgcattagcgt 130  Q
     |||||||||||| ||||||    
T  25403990 atttcatattgcactagcgt 25404009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 72 - 229
Target Start/End: Original strand, 25403900 - 25404057
Alignment:
Q  72 actagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaattt 171  Q
    ||||||||||||||||||||| ||||||||||||||||||||| || ||| | ||||||||||||||||| |  || || |||||||  | |||||  ||    
T  25403900 actagcgtgacttaagtcaagcaacgtgacttaagttgcgtttaattttgaactagcgtgacttaagtcaagtaacgtgacttaagttgcatttcatatt 25403999  T
Q  172 gcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagc 229  Q
    ||||||||| |||||||||| ||||||||| ||||   || ||||||| |||||||||    
T  25404000 gcactagcgtatgttaagttacgtaagggtaaaaaaaaatattactttgggaatgagc 25404057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 259
Target Start/End: Original strand, 17436456 - 17436621
Alignment:
Q  94 aacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgc 193  Q
    |||||||||||||||||||| ||| ||| | |||||||| ||||||||||| ||   |||||||| |||||  ||||||||||||||||||||||  ||     
T  17436456 aacgtgacttaagttgcgttacattttgtactagcgtgagttaagtcacgcaacgcatcttaagttacgttgtaatttgcactagcgcatgttaacatgt 17436555  T
Q  194 gtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagcagaattctt 259  Q
    ||| ||       |||  |||||||| |||| ||||||| |||||||| |||||||||||||||||    
T  17436556 gtagggacatttcggtcatttactttgggaacgagcgaatccatttgggtaatgagcagaattctt 17436621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 257
Target Start/End: Complemental strand, 24327076 - 24326944
Alignment:
Q  125 tagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaa 224  Q
    |||||||| ||||||||| |||  |||||||||||||||  || ||||||||| |||| |||||||   |||||||| |||| ||  |||| ||| ||||    
T  24327076 tagcgtgagttaagtcacactatttgtcttaagtcacgtagcattttgcactaacgcaagttaagtcaagtaagggtaaaaatgtcatttattttgggaa 24326977  T
Q  225 tgagcgaaaccatttggataatgagcagaattc 257  Q
    ||||||||  ||||||  |||||||||||||||    
T  24326976 tgagcgaattcatttgagtaatgagcagaattc 24326944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 807202 - 807247
Alignment:
Q  212 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    ||||||||||||||||||||| | |||||||||| |||||||||||    
T  807202 tttactttaggaatgagcgaatctatttggataaagagcagaattc 807247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 31522568 - 31522613
Alignment:
Q  212 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    |||||||| |||||||||| |||||||||| |||||||||||||||    
T  31522568 tttactttgggaatgagcggaaccatttgggtaatgagcagaattc 31522613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 32275804 - 32275849
Alignment:
Q  212 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    |||||||| |||||||||| |||||||||||||||||||| |||||    
T  32275804 tttactttgggaatgagcggaaccatttggataatgagcataattc 32275849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 14153399 - 14153353
Alignment:
Q  212 tttactttaggaatgagcgaaaccatttggataatgagcagaattct 258  Q
    |||||||| ||||||||| ||| ||||||| ||||||||||||||||    
T  14153399 tttactttgggaatgagcaaaatcatttgggtaatgagcagaattct 14153353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 4e-38; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 125 - 257
Target Start/End: Original strand, 36933168 - 36933300
Alignment:
Q  125 tagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaa 224  Q
    ||||||||||||||||| |||| |||||||||| | |||  ||||||||||||||||||||||||||||||||| || ||||||| |||||||||  |||    
T  36933168 tagcgtgacttaagtcatgctatctgtcttaagccgcgtaccaatttgcactagcgcatgttaagttgcgtaagagtaaaaaggtcttttactttgagaa 36933267  T
Q  225 tgagcgaaaccatttggataatgagcagaattc 257  Q
    | |||||||||||||| ||||||||||||||||    
T  36933268 taagcgaaaccatttgaataatgagcagaattc 36933300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 258
Target Start/End: Complemental strand, 28678009 - 28677885
Alignment:
Q  134 ttaagtcacgctacctgtcttaagtcacgtttcaatttgcactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaa 233  Q
    |||||||||||||| | | |||||| |||||  ||||| || ||||||||||||| || |||| ||||     |||  ||||||||||||||||||||      
T  28678009 ttaagtcacgctacttattttaagttacgttataattttcagtagcgcatgttaacttacgtaggggtatttcggtcatttactttaggaatgagcgatt 28677910  T
Q  234 ccatttggataatgagcagaattct 258  Q
    |||||||||||||||||||||||||    
T  28677909 ccatttggataatgagcagaattct 28677885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 251
Target Start/End: Original strand, 6705929 - 6706107
Alignment:
Q  73 ctagcgtgacttaagtcaagtaacgtgacttaagttgcgtttcatattgcattagcgtgacttaagtcacgctacctgtcttaagtcacgtttcaatttg 172  Q
    ||||||||  ||||||||   |||||| ||||||||||||  ||| ||| | |||||||| ||||||||||| || | | |||||  |||||  ||||||    
T  6705929 ctagcgtggtttaagtcacacaacgtggcttaagttgcgtaacattttgtactagcgtgagttaagtcacgcaacatatgttaagatacgttgtaatttg 6706028  T
Q  173 cactagcgcatgttaagttgcgtaagggtgaaaaggtattttactttaggaatgagcgaaaccatttggataatgagca 251  Q
    ||||||||||||||||  |||||| |||       ||  |||||||| | |||||||||| ||||||||||||||||||    
T  6706029 cactagcgcatgttaacatgcgtaggggcatttcagtcatttactttggaaatgagcgaatccatttggataatgagca 6706107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 4845346 - 4845302
Alignment:
Q  212 tttactttaggaatgagcgaaaccatttggataatgagcagaatt 256  Q
    |||||||||||||||||||| || ||||| |||||||||||||||    
T  4845346 tttactttaggaatgagcgatactatttgaataatgagcagaatt 4845302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 259
Target Start/End: Complemental strand, 1145186 - 1145139
Alignment:
Q  212 tttactttaggaatgagcgaaaccatttggataatgagcagaattctt 259  Q
    |||||||| ||||||||||||||  ||||||||||||||| |||||||    
T  1145186 tttactttgggaatgagcgaaactgtttggataatgagcataattctt 1145139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 34016047 - 34016002
Alignment:
Q  212 tttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    |||||||| |||||||||||| |||||| | |||||||||||||||    
T  34016047 tttactttgggaatgagcgaatccatttaggtaatgagcagaattc 34016002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 261
Target Start/End: Original strand, 396 - 446
Alignment:
Q  211 ttttactttaggaatgagcgaaaccatttggataatgagcagaattctttg 261  Q
    ||||||||| ||||||||||||||||||||| ||| ||||| |||||||||    
T  396 ttttactttgggaatgagcgaaaccatttgggtaaagagcataattctttg 446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 1521 - 1475
Alignment:
Q  211 ttttactttaggaatgagcgaaaccatttggataatgagcagaattc 257  Q
    ||||||||||  |||||||| |||||||||| |||||||||||||||    
T  1521 ttttactttaaaaatgagcggaaccatttgggtaatgagcagaattc 1475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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