View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4166_high_19 (Length: 281)
Name: NF4166_high_19
Description: NF4166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4166_high_19 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 15 - 265
Target Start/End: Original strand, 13607902 - 13608152
Alignment:
| Q |
15 |
cataggtaaccactaaaatgtgaagaaaaagtagcgaaagatgaaaggaacttgaccaaaatatgttagtggaaaattccaaggatgttacatacgaatg |
114 |
Q |
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| T |
13607902 |
cataggtaaccactaaaatgtgaagaaaaagtagcgaaagatgaaaggaacttgaccaaaatatgttagtggaaaattccaaggatgttacatacgaatg |
13608001 |
T |
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| Q |
115 |
tttgtggaagctggcaagaaagatcctggaaaagactcaactacgaatactccaacaattatatttaagctgcgttgcaatgtaaagtgagactattctt |
214 |
Q |
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| T |
13608002 |
tttgtggaagctggcaagaaagatcctggaaaagactcaactacgaatactccaacaattatatttaagctgcgttgcaatgtaaagtgagactattctt |
13608101 |
T |
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| Q |
215 |
aacaacttataacaattatctaatttttcttttcagtttcacagcaagaaa |
265 |
Q |
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| T |
13608102 |
aacaacttataacaattatctaatttttcttttcagtttcacagcaagaaa |
13608152 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 169
Target Start/End: Complemental strand, 6473662 - 6473569
Alignment:
| Q |
82 |
agtggaaaattccaaggatgttacatacgaatgtttgtgga----agctggcaagaaagatcctggaaaagactcaa--ctacgaatactccaa |
169 |
Q |
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| T |
6473662 |
agtgggaaattccaagggtgttacatacgaatgttggtggaagctagctagcaagaaagaccctggaaaaggctcaaatgtacgaatactccaa |
6473569 |
T |
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