View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4166_high_21 (Length: 265)

Name: NF4166_high_21
Description: NF4166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4166_high_21
NF4166_high_21
[»] chr2 (27 HSPs)
chr2 (110-213)||(33242287-33242389)
chr2 (110-213)||(33250208-33250310)
chr2 (1-83)||(10745239-10745321)
chr2 (1-83)||(45136977-45137059)
chr2 (1-81)||(36836338-36836418)
chr2 (1-83)||(2754058-2754140)
chr2 (1-83)||(17136430-17136512)
chr2 (1-81)||(6672802-6672882)
chr2 (1-81)||(40156083-40156163)
chr2 (1-83)||(36380139-36380221)
chr2 (1-83)||(44650436-44650518)
chr2 (1-83)||(25987668-25987751)
chr2 (1-83)||(21637940-21638022)
chr2 (1-80)||(5039463-5039542)
chr2 (1-83)||(558446-558528)
chr2 (1-83)||(26690197-26690279)
chr2 (1-83)||(30372687-30372769)
chr2 (1-79)||(33066633-33066711)
chr2 (24-83)||(13047163-13047222)
chr2 (1-76)||(21487191-21487266)
chr2 (41-83)||(2098833-2098875)
chr2 (1-83)||(3200924-3201006)
chr2 (39-83)||(2357083-2357127)
chr2 (210-256)||(33242777-33242823)
chr2 (210-256)||(33250697-33250743)
chr2 (1-80)||(4553568-4553647)
chr2 (1-83)||(7860153-7860235)
[»] chr7 (17 HSPs)
chr7 (1-83)||(35109734-35109816)
chr7 (1-83)||(37095217-37095299)
chr7 (1-83)||(38265244-38265326)
chr7 (1-83)||(38405161-38405243)
chr7 (1-83)||(41151215-41151298)
chr7 (1-83)||(16059360-16059442)
chr7 (1-83)||(21577105-21577187)
chr7 (1-83)||(34721877-34721959)
chr7 (1-83)||(245271-245353)
chr7 (3-83)||(45278497-45278577)
chr7 (1-83)||(12472164-12472246)
chr7 (1-83)||(18116951-18117033)
chr7 (1-83)||(11216812-11216894)
chr7 (1-83)||(48176442-48176525)
chr7 (3-79)||(23028728-23028804)
chr7 (48-82)||(39234853-39234887)
chr7 (1-83)||(24123026-24123114)
[»] chr3 (21 HSPs)
chr3 (1-83)||(8400898-8400980)
chr3 (1-83)||(50823741-50823823)
chr3 (1-83)||(50852037-50852119)
chr3 (1-83)||(7417841-7417923)
chr3 (1-83)||(22371736-22371818)
chr3 (1-83)||(34824599-34824681)
chr3 (1-83)||(35198808-35198890)
chr3 (5-83)||(37330614-37330692)
chr3 (1-83)||(22855930-22856012)
chr3 (5-83)||(30534909-30534987)
chr3 (1-83)||(55468042-55468125)
chr3 (1-83)||(43334061-43334143)
chr3 (1-83)||(52545364-52545446)
chr3 (12-79)||(19872494-19872561)
chr3 (12-83)||(37454751-37454822)
chr3 (1-71)||(29635911-29635981)
chr3 (1-83)||(42876258-42876340)
chr3 (18-83)||(25910673-25910738)
chr3 (47-83)||(773666-773702)
chr3 (40-83)||(31297531-31297574)
chr3 (1-54)||(48077977-48078030)
[»] chr1 (16 HSPs)
chr1 (1-81)||(30370069-30370149)
chr1 (1-83)||(22024146-22024228)
chr1 (1-83)||(30054449-30054531)
chr1 (2-81)||(35371754-35371833)
chr1 (1-83)||(12025224-12025306)
chr1 (1-83)||(14498086-14498168)
chr1 (1-83)||(30850847-30850929)
chr1 (1-83)||(45324049-45324131)
chr1 (1-80)||(21090158-21090237)
chr1 (1-83)||(20014501-20014583)
chr1 (1-83)||(4573422-4573504)
chr1 (5-83)||(33762547-33762625)
chr1 (17-83)||(35618034-35618100)
chr1 (5-83)||(33763261-33763339)
chr1 (30-79)||(17015192-17015241)
chr1 (1-78)||(44438562-44438639)
[»] chr8 (19 HSPs)
chr8 (1-83)||(11404044-11404126)
chr8 (1-83)||(17095593-17095675)
chr8 (1-83)||(32296646-32296728)
chr8 (1-83)||(19723354-19723436)
chr8 (1-70)||(21355004-21355073)
chr8 (1-81)||(36261689-36261769)
chr8 (12-83)||(29767240-29767311)
chr8 (1-83)||(4840183-4840265)
chr8 (1-79)||(22711552-22711630)
chr8 (4-83)||(11909430-11909509)
chr8 (3-83)||(28739568-28739648)
chr8 (1-83)||(43288115-43288197)
chr8 (3-83)||(41553330-41553410)
chr8 (4-81)||(30682885-30682961)
chr8 (30-83)||(27879567-27879620)
chr8 (30-83)||(28019748-28019801)
chr8 (17-83)||(11610339-11610405)
chr8 (1-57)||(24475029-24475085)
chr8 (43-83)||(44741927-44741967)
[»] chr6 (7 HSPs)
chr6 (1-83)||(20685368-20685450)
chr6 (1-83)||(35163757-35163839)
chr6 (1-81)||(17948723-17948803)
chr6 (1-83)||(19686834-19686916)
chr6 (1-82)||(15070168-15070249)
chr6 (1-61)||(2711763-2711823)
chr6 (39-81)||(14505533-14505575)
[»] chr4 (24 HSPs)
chr4 (1-83)||(7173592-7173674)
chr4 (1-83)||(51066536-51066618)
chr4 (1-83)||(46494405-46494487)
chr4 (1-83)||(36192584-36192666)
chr4 (6-83)||(22304098-22304175)
chr4 (1-83)||(29576458-29576540)
chr4 (1-83)||(30970391-30970473)
chr4 (1-83)||(32139207-32139289)
chr4 (1-83)||(51713972-51714054)
chr4 (1-83)||(55231730-55231812)
chr4 (3-83)||(39863785-39863865)
chr4 (1-77)||(676771-676847)
chr4 (29-83)||(2570272-2570326)
chr4 (1-83)||(50905791-50905873)
chr4 (1-60)||(8740491-8740550)
chr4 (28-83)||(47627000-47627055)
chr4 (32-83)||(2294723-2294774)
chr4 (44-83)||(51066240-51066279)
chr4 (25-83)||(23084472-23084530)
chr4 (1-75)||(41523440-41523514)
chr4 (1-83)||(51279040-51279122)
chr4 (33-82)||(28202598-28202647)
chr4 (28-79)||(37990606-37990657)
chr4 (1-78)||(4080564-4080641)
[»] scaffold0021 (1 HSPs)
scaffold0021 (1-81)||(107700-107780)
[»] chr5 (7 HSPs)
chr5 (1-83)||(17064366-17064448)
chr5 (1-83)||(20983010-20983092)
chr5 (1-81)||(41910867-41910947)
chr5 (14-83)||(37976606-37976675)
chr5 (24-83)||(31673895-31673954)
chr5 (47-80)||(35237069-35237102)
chr5 (21-81)||(38031254-38031314)
[»] scaffold0691 (1 HSPs)
scaffold0691 (3-65)||(6994-7056)
[»] scaffold0128 (1 HSPs)
scaffold0128 (210-256)||(40600-40646)


Alignment Details
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 110 - 213
Target Start/End: Original strand, 33242287 - 33242389
Alignment:
Q  110 ctccccatttgcctgaactcccgcgtggctgatgggtagacttggaaaggtaatctccatggtatttactcaagcacaggatggatattattggttgaac 209  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||    
T  33242287 ctccccatttgcctgaactcccgcgtgactgatgggtatacttggaaaggtaatcttcatggtatttactc-agcagaggatggatattattggttgaac 33242385  T
Q  210 atga 213  Q
    ||||    
T  33242386 atga 33242389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 110 - 213
Target Start/End: Original strand, 33250208 - 33250310
Alignment:
Q  110 ctccccatttgcctgaactcccgcgtggctgatgggtagacttggaaaggtaatctccatggtatttactcaagcacaggatggatattattggttgaac 209  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||    
T  33250208 ctccccatttgcctgaactcccgcgtgactgatgggtatacttggaaaggtaatcttcatggtatttactc-agcagaggatggatattattggttgaac 33250306  T
Q  210 atga 213  Q
    ||||    
T  33250307 atga 33250310  T

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Target: chr2; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 10745321 - 10745239
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| |||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10745321 aggtaaatgtaattatctttgtaagtgctctttgaacccgaaggtattccctgccttggactggggcaccatcccctcaccct 10745239  T

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Target: chr2; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 45137059 - 45136977
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  45137059 aggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccttcaccct 45136977  T

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Target: chr2; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 36836418 - 36836338
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcacc 81  Q
    |||||||||| ||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  36836418 aggtaaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgccttggactggggcaccatcccctcacc 36836338  T

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Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 2754140 - 2754058
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| | ||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  2754140 aggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctgccttggactggggcaccatcccctcaccct 2754058  T

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Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 17136430 - 17136512
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| | ||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  17136430 aggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccccgccttggactggggcaccatcccctcaccct 17136512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 6672882 - 6672802
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcacc 81  Q
    |||||||||| |||||||||||  | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  6672882 aggtaaatgtaattacctttgtacgcgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacc 6672802  T

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Target: chr2; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 40156083 - 40156163
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcacc 81  Q
    |||||||||| ||||||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||    
T  40156083 aggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctaccttgaactggggcaccatcccctcacc 40156163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 36380221 - 36380139
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||| ||||||| |||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||    
T  36380221 aggtaaatgtaattccctttgtaagtgctctttgagcccgaaggtcttccctaccttggactgaggcaccatcccctcaccct 36380139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 44650436 - 44650518
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||||| ||||||||||||  |||||| ||||||||||||||||| |||||||||||||||||||||    
T  44650436 aggtaaatgtaattacctttgtaagtgctctttgagtccgaagatcttccctgccttggaccggggcaccatcccctcaccct 44650518  T

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Target: chr2; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 25987751 - 25987668
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtctt-ccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||||| ||||||||||||  ||||||||||| ||||||||||| |||||||||||||||||||||||    
T  25987751 aggtaaatgtaattacctttgtaagtgctctttgagtccgaaggtctttccctgccttggtctggggcaccatcccctcaccct 25987668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 21637940 - 21638022
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| | ||||||||| |||||||||||| ||| ||||||||| |||||||||||| ||||||||||||||||||||    
T  21637940 aggtaaatgtaaatacctttgtaagtgctctttgagcccaaaggtcttctctgccttggactagggcaccatcccctcaccct 21638022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 5039463 - 5039542
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcac 80  Q
    ||||||| || ||||||||||| |||||||||||| ||||||| |||||||| ||||||||| |||||||||||||||||    
T  5039463 aggtaaacgtaattacctttgtaagtgctctttgagcccgaagatcttccctaccttggactagggcaccatcccctcac 5039542  T

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Target: chr2; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 558528 - 558446
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||| ||||| |||||||||||| |  ||||||||||||| ||||||| ||||||||||||||||||||||    
T  558528 aggtaaatgtaattacttttgtaagtgctctttgagctagaaggtcttcccttccttggaatggggcaccatcccctcaccct 558446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 26690197 - 26690279
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||||| |||| ||||||    ||||||||||||||||||||||||| |||||||||||||||||||    
T  26690197 aggtaaatgtaattacctttgtaagtgatctttgtgttcgaaggtcttccctgccttggactgaggcaccatcccctcaccct 26690279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 30372769 - 30372687
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| | || ||||||||||||||||||| |||||||||||||| ||||||| ||||||| ||||| ||||||||||    
T  30372769 aggtaaatgtaaatatctttgttagtgctctttgagcccgaaggtcttccatgccttgaactggggtaccataccctcaccct 30372687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 33066633 - 33066711
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctca 79  Q
    |||||||||| | || |||||| |||||||||||| || |||||||||| || ||||||||||||||||||||||||||    
T  33066633 aggtaaatgtaaatatctttgtaagtgctctttgagcctgaaggtcttctctaccttggactggggcaccatcccctca 33066711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 13047222 - 13047163
Alignment:
Q  24 agtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||||| ||| ||| |||||||||||||||||||| ||||||||||||||||||    
T  13047222 agtgctctttgagcccaaagatcttccctgccttggactggagcaccatcccctcaccct 13047163  T

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Target: chr2; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 21487191 - 21487266
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccc 76  Q
    |||||||||| | ||  ||||| |||||||||||| |||||| |||||||||||||| ||||||||||||||||||    
T  21487191 aggtaaatgtaaatatttttgtaagtgctctttgagcccgaaagtcttccctgccttagactggggcaccatcccc 21487266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 2098875 - 2098833
Alignment:
Q  41 aaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  2098875 aaggtcttccctgccttggactggggcaccatcccctcaccct 2098833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 3200924 - 3201006
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||||| |||| ||||||| || |||| ||||| ||||||| ||||||||||||||| |||| ||||    
T  3200924 aggtaaatgtaattacctttgtaagtgttctttgagcctgaagatcttctctgccttagactggggcaccatctcctcgccct 3201006  T

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Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 2357127 - 2357083
Alignment:
Q  39 cgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  2357127 cgaaggtcttccatgccttggactggggcaccatcccctcaccct 2357083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 33242777 - 33242823
Alignment:
Q  210 atgaattggtttcacctctctctctaaagatttgtaccgagaattat 256  Q
    ||||||||||||||||| ||||||||||||||||||  |||||||||    
T  33242777 atgaattggtttcacctgtctctctaaagatttgtattgagaattat 33242823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 33250697 - 33250743
Alignment:
Q  210 atgaattggtttcacctctctctctaaagatttgtaccgagaattat 256  Q
    ||||||||||||||||| ||||||||||||||||||| || ||||||    
T  33250697 atgaattggtttcacctgtctctctaaagatttgtactgataattat 33250743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 4553647 - 4553568
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcac 80  Q
    |||||||| | | ||| ||||| ||| ||||||||  ||| |||||||| ||| ||| ||||||||||||||||||||||    
T  4553647 aggtaaatataaatacatttgtaagtactctttgagtccggaggtcttctctgtcttagactggggcaccatcccctcac 4553568  T

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Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 7860235 - 7860153
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    ||||||||||   ||| ||||| |||| ||||||| ||||||| | ||| ||||||||||||| |||| ||||||||| ||||    
T  7860235 aggtaaatgtacatacatttgtaagtgttctttgagcccgaagattttctctgccttggactgaggcatcatcccctctccct 7860153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 35109734 - 35109816
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35109734 aggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccct 35109816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 37095299 - 37095217
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  37095299 aggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccct 37095217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 38265326 - 38265244
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  38265326 aggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccct 38265244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 38405243 - 38405161
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38405243 aggtaaatgtaattatctttgtaagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 38405161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 41151215 - 41151298
Alignment:
Q  1 aggtaaatgtcattaccttt-gttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41151215 aggtaaatgtaattaccttttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccct 41151298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 16059442 - 16059360
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||||| |||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  16059442 aggtaaatgtaattacctttgtaagtgctctctgagcccgaaggtcttccctaccttggactggggcaccatcccctcaccct 16059360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 21577187 - 21577105
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| | ||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  21577187 aggtaaatgtaaatacctttgtaagtgctctttgagtccgaaggtcttccctgccttggactggggcaccatcccctcaccct 21577105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 34721877 - 34721959
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||||| |||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||    
T  34721877 aggtaaatgtaattacctttgtaagtgctctttgagcccgaaggacttccctgccttggactcgggcaccatcccctcaccct 34721959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 245353 - 245271
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| |||| |||||| |  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  245353 aggtaaatgtaattatctttgtaaacgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccct 245271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 45278497 - 45278577
Alignment:
Q  3 gtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||| |||| |||||| |||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  45278497 gtaaatgtaattatctttgtaagtgctctttaaacccgaatgtcttccctgccttggactggagcaccatcccctcaccct 45278577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 12472164 - 12472246
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||| | ||||||||||| |||||||||||| | ||||||||||||||| |||||||||||| ||||||||||||||||    
T  12472164 aggtaaatataattacctttgtaagtgctctttgagcacgaaggtcttccctgtcttggactggggtaccatcccctcaccct 12472246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 18117033 - 18116951
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| |||||||||||  |||||||||||   ||||| |||||||||||||||||||||||||||||||||||||||    
T  18117033 aggtaaatgtaattacctttgtaggtgctctttgaggtcgaagatcttccctgccttggactggggcaccatcccctcaccct 18116951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 11216812 - 11216894
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| | ||||||||| |||||||||||| ||||||||||||| || | ||||||| ||||| ||| ||||||||||    
T  11216812 aggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttctctactttggactagggcatcattccctcaccct 11216894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 48176442 - 48176525
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgcc-ttggactggggcaccatcccctcaccct 83  Q
    |||||||||| | ||| ||||| |||| | ||||| || |||||| |||||| || ||||||||||||||||||||||||||||    
T  48176442 aggtaaatgtaaatacttttgtaagtgttttttgagccggaaggttttccctccccttggactggggcaccatcccctcaccct 48176525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 23028728 - 23028804
Alignment:
Q  3 gtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctca 79  Q
    |||||||| ||||||||| | |||| | |||||||||||||| ||||||| |||| ||||| | |||||||| ||||    
T  23028728 gtaaatgtaattacctttataagtgttttttgaacccgaaggccttccctaccttagactgagacaccatcctctca 23028804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 82
Target Start/End: Original strand, 39234853 - 39234887
Alignment:
Q  48 tccctgccttggactggggcaccatcccctcaccc 82  Q
    |||||||| ||||||||||||||||||||||||||    
T  39234853 tccctgccatggactggggcaccatcccctcaccc 39234887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 24123026 - 24123114
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacc------cgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||||| |||  |||||||| |      ||||||||||| |||||||||| |||| |||||||| ||||||||    
T  24123026 aggtaaatgtaattacctttgtaagtattctttgaatctgaattcgaaggtcttctctgccttggattgggtcaccatcctctcaccct 24123114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 8400898 - 8400980
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8400898 aggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccct 8400980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 50823741 - 50823823
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  50823741 aggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccct 50823823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 50852119 - 50852037
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  50852119 aggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccct 50852037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 7417841 - 7417923
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  7417841 aggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttcactgccttggactggggcaccatcccctcaccct 7417923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 22371818 - 22371736
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||||| |||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||    
T  22371818 aggtaaatgtaattacctttgtaagtgctctttgaacccgaagatcttccctgctttagactggggcaccatcccctcaccct 22371736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 34824599 - 34824681
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| |||| |||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  34824599 aggtaaatgtaattatctttgtaagtgctctttgatcccgaaggtcttcccggccttggactggggcaccatcccctcaccct 34824681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 35198808 - 35198890
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| | ||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  35198808 aggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggagcaccatcccctcaccct 35198890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 37330692 - 37330614
Alignment:
Q  5 aaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||| ||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  37330692 aaatgtaattacctttgtaagtgctctttgagtccgaaggtcttccctgccttggactggggcaccatcccctcaccct 37330614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 22855930 - 22856012
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||||| |||||||||| | ||| |||||||||||||||||||||||| ||||||||||||||||||    
T  22855930 aggtaaatgtaattacctttgtaagtgctctttaagcccaaaggtcttccctgccttggactggagcaccatcccctcaccct 22856012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 30534987 - 30534909
Alignment:
Q  5 aaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||| ||||||||||| |||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||    
T  30534987 aaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgccttggactggggtaccatcccctcaccct 30534909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 55468042 - 55468125
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaaccc-gaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| | ||||||||| |||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||    
T  55468042 aggtaaatgtaaatacctttgtaagtgctctttgagccccgaaggtcttctctgccttggactggggcaccatcccctcaccct 55468125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 43334143 - 43334061
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| | ||| ||||| |||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  43334143 aggtaaatgtaaatacttttgtaagtgctatttgagcccgaaggtcttccctgccttggactggggtaccatcccctcaccct 43334061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 52545364 - 52545446
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| | ||| ||||| |||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  52545364 aggtaaatgtaaatacttttgtaagtagtctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccct 52545446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 19872561 - 19872494
Alignment:
Q  12 attacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctca 79  Q
    ||||||||||| ||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  19872561 attacctttgtaagtactctttgaatccgaaggtcttccctgtcttggactggggcaccatcccctca 19872494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 83
Target Start/End: Complemental strand, 37454822 - 37454751
Alignment:
Q  12 attacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    ||||||||||| |||||||||||| |||||||||||||||| |||| || ||||||||||||||||||||||    
T  37454822 attacctttgtaagtgctctttgagcccgaaggtcttccctaccttagattggggcaccatcccctcaccct 37454751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 29635911 - 29635981
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcacca 71  Q
    |||||||||| ||||||||||| |||||||||| | |||||| ||||||||||||||||| ||||||||||    
T  29635911 aggtaaatgtaattacctttgtaagtgctctttaagcccgaatgtcttccctgccttggagtggggcacca 29635981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 42876258 - 42876340
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||||| ||||||||||||||  ||| |||||||||  |||||||| ||||||||||| ||||||||    
T  42876258 aggtaaatgtaattacctttgtaagtgctctttgaacttgaatgtcttccctatcttggactagggcaccatcctctcaccct 42876340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 25910738 - 25910673
Alignment:
Q  18 tttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    ||||| ||||||||||||  |||||| ||||||||||||||||||| |||||||||||||||||||    
T  25910738 tttgtaagtgctctttgagtccgaagatcttccctgccttggactgaggcaccatcccctcaccct 25910673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 83
Target Start/End: Original strand, 773666 - 773702
Alignment:
Q  47 ttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||| ||||||||||||||||||||||||||||||    
T  773666 ttcccttccttggactggggcaccatcccctcaccct 773702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 31297574 - 31297531
Alignment:
Q  40 gaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||||    
T  31297574 gaaggtcttccttgccttggactggggaaccatgccctcaccct 31297531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 48078030 - 48077977
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgc 54  Q
    |||||||||| | || |||||| |||||||||||| || |||||||||||||||    
T  48078030 aggtaaatgtaaatatctttgtaagtgctctttgagcctgaaggtcttccctgc 48077977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 30370149 - 30370069
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcacc 81  Q
    |||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30370149 aggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcacc 30370069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 22024146 - 22024228
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  22024146 aggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttctctgccttggactggggcaccatcccctcaccct 22024228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 30054531 - 30054449
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  30054531 aggtaaatgtaattacctttgtaaatgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccct 30054449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 35371833 - 35371754
Alignment:
Q  2 ggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcacc 81  Q
    ||||||||| ||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  35371833 ggtaaatgtaattacctttgtaagtgctctttgagcccgaagttcttccctgccttggactggggcaccatcccctcacc 35371754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 12025224 - 12025306
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||||| ||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  12025224 aggtaaatgtaattacctttgtaagtactatttgagcccgaaggtcttccctgccttggactggggcaccaccccctcaccct 12025306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 14498168 - 14498086
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||||| ||||||||||||  || ||||||||||||||||||||||||||| |||||||||||||||    
T  14498168 aggtaaatgtaattacctttgtaagtgctctttgagaccaaaggtcttccctgccttggactggggcgccatcccctcaccct 14498086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 30850929 - 30850847
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||| | ||| ||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  30850929 aggtaaatataattgcctttgtaagtgctctttgaacccgaaggtctttcctgtcttggactggggcaccatcccctcaccct 30850847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 45324049 - 45324131
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| | ||||||||| ||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  45324049 aggtaaatgtaaatacctttgtaagtgctccttgagcccgaaggtcttccctgctttggactggggcaccatcccctcaccct 45324131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 21090158 - 21090237
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcac 80  Q
    |||||||||| | ||| ||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  21090158 aggtaaatgtaaatacatttgtaaatgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcac 21090237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 20014501 - 20014583
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||| ||||| | |||||||||| || |||||||||||||||||||||||| |||||||||||||||||||    
T  20014501 aggtaaatgtaattacatttgtaaatgctctttgagcctgaaggtcttccctgccttggactgaggcaccatcccctcaccct 20014583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 4573422 - 4573504
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| | ||||||||| |||||||||||| | |||||||||||||||  |||||||| ||||| |||||||||||||    
T  4573422 aggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctgttttggactgaggcactatcccctcaccct 4573504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 33762625 - 33762547
Alignment:
Q  5 aaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||| ||||||||||| |||| | ||||| |||||| || |||||||||||||||||||||| ||||||||||||||    
T  33762625 aaatgtaattacctttgtaagtgttttttgagcccgaaagttttccctgccttggactggggcatcatcccctcaccct 33762547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 35618034 - 35618100
Alignment:
Q  17 ctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||| |||||||||||| |||||||||||||| ||| ||||||||||| ||||||||||||||||    
T  35618034 ctttgtaagtgctctttgagcccgaaggtcttccttgctttggactggggtaccatcccctcaccct 35618100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 33763339 - 33763261
Alignment:
Q  5 aaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||| ||||||||||| |||| | ||||| |||||| || |||||||||||| ||||||||| ||||||||||||||    
T  33763339 aaatgtaattacctttgtaagtgttttttgagcccgaaagttttccctgccttgaactggggcatcatcccctcaccct 33763261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 17015192 - 17015241
Alignment:
Q  30 ctttgaacccgaaggtcttccctgccttggactggggcaccatcccctca 79  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  17015192 ctttgagcccgaaggtcttccctgctttggactggggcaccatcccctca 17015241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 44438639 - 44438562
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctc 78  Q
    |||||||||| ||||| ||||| |||| ||||| ||  |||||||||||||||||||| ||||||| |||||||||||    
T  44438639 aggtaaatgtaattacttttgtaagtgttctttaaattcgaaggtcttccctgccttgaactggggtaccatcccctc 44438562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 11404044 - 11404126
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| | ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11404044 aggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccct 11404126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 17095593 - 17095675
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17095593 aggtaaatgtaattacctttgtaaatgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccct 17095675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 32296728 - 32296646
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  32296728 aggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggattggggcaccatcccctcaccct 32296646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 19723354 - 19723436
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||||| |||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||    
T  19723354 aggtaaatgtaattacctttgtaagtgctctttgagcccaaagatcttccctgccttggactggggcaccatcccctcaccct 19723436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 21355073 - 21355004
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcacc 70  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  21355073 aggtaaatgtaattacctttgtaagtgctctttgaacccgaaggtcttccctgccttggactggggcacc 21355004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 36261689 - 36261769
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcacc 81  Q
    |||||||||| ||||||||||| |||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||    
T  36261689 aggtaaatgtaattacctttgtaagtgctctttgagcccgaagatcttccctgccttgaactggggcaccatcccctcacc 36261769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 29767240 - 29767311
Alignment:
Q  12 attacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    ||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29767240 attacctttgtaagtgttctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccct 29767311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 4840183 - 4840265
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    ||||||||||||||||| |||| ||||||||||||  || |||||||||||||||||||||| ||||||||||||||||||||    
T  4840183 aggtaaatgtcattaccattgtaagtgctctttgagtccaaaggtcttccctgccttggactagggcaccatcccctcaccct 4840265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 22711552 - 22711630
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctca 79  Q
    |||||||||| | ||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  22711552 aggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccttgccttggactggggcaccatcccctca 22711630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 11909509 - 11909430
Alignment:
Q  4 taaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    ||||||| | ||||||| | |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  11909509 taaatgtaaatacctttctaagtgctctttgagctcgaaggtcttccctgccttggactggggcaccatcccctcaccct 11909430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 28739648 - 28739568
Alignment:
Q  3 gtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||| | ||||||||| |||||||||||| |||||||||||||||| ||||||||||  ||||||||||||||||||    
T  28739648 gtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctaccttggactgcagcaccatcccctcaccct 28739568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 43288115 - 43288197
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||||| | || | |||||  ||||||||||||||||||||||||||| ||||||||||||||||||    
T  43288115 aggtaaatgtaattacctttgtaattgatttttgagtccgaaggtcttccctgccttggactggagcaccatcccctcaccct 43288197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 83
Target Start/End: Original strand, 41553330 - 41553410
Alignment:
Q  3 gtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||| | ||||||||| |||| ||||||| | ||||||||||||||||||| |||||| ||||||||||||||||||    
T  41553330 gtaaatgtaaatacctttgtaagtgttctttgagctcgaaggtcttccctgccttagactggagcaccatcccctcaccct 41553410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 30682885 - 30682961
Alignment:
Q  4 taaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcacc 81  Q
    ||||||| | ||| ||||| |||| ||||||| ||||||| |||||||||||||||||| ||||||||||||||||||    
T  30682885 taaatgtaaatacttttgtaagtgttctttgagcccgaagatcttccctgccttggact-gggcaccatcccctcacc 30682961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 27879620 - 27879567
Alignment:
Q  30 ctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||| || |||| |||||||| ||||||||||||||||||||||||||||||    
T  27879620 ctttgagcctgaagatcttccctaccttggactggggcaccatcccctcaccct 27879567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 83
Target Start/End: Complemental strand, 28019801 - 28019748
Alignment:
Q  30 ctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||| || |||| |||||||| ||||||||||||||||||||||||||||||    
T  28019801 ctttgagcctgaagatcttccctaccttggactggggcaccatcccctcaccct 28019748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 11610339 - 11610405
Alignment:
Q  17 ctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||| |||||| ||| | |||||||||||| | |  |||||||||||||||||||||||||||||    
T  11610339 ctttgtaagtgctgtttaagcccgaaggtcttacttatcttggactggggcaccatcccctcaccct 11610405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 24475085 - 24475029
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgcctt 57  Q
    |||||||||| | ||||||||| |||| ||||||| |||||||||||| ||||||||    
T  24475085 aggtaaatgtaaatacctttgtaagtgttctttgagcccgaaggtctttcctgcctt 24475029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 83
Target Start/End: Complemental strand, 44741967 - 44741927
Alignment:
Q  43 ggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||| |||||||||||||||||  |||||||||||||||    
T  44741967 ggtcttacctgccttggactggggtgccatcccctcaccct 44741927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 8e-30; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 20685368 - 20685450
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  20685368 aggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccttcaccct 20685450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 35163839 - 35163757
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| | ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35163839 aggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccct 35163757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 17948723 - 17948803
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcacc 81  Q
    |||||||||| | ||||||||| |||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||    
T  17948723 aggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgtcttggactgggacaccatcccctcacc 17948803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 19686916 - 19686834
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||||| |||||||||||| ||||||| |||| ||| |||| |||||||||| ||||||||||||||    
T  19686916 aggtaaatgtaattacctttgtaagtgctctttgagcccgaagatctttcctcccttagactggggcatcatcccctcaccct 19686834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 15070168 - 15070249
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccc 82  Q
    |||||||| | ||||| ||||| |||| || |||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  15070168 aggtaaatataattacatttgtaagtgttcattgagcccgaaggtcttccctgccttagactggggcaccatcccctcaccc 15070249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 2711823 - 2711763
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggac 61  Q
    |||||||||| | ||||||||| |||||||||||| | |||||||||||||||||||||||    
T  2711823 aggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctgccttggac 2711763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 81
Target Start/End: Complemental strand, 14505575 - 14505533
Alignment:
Q  39 cgaaggtcttccctgccttggactggggcaccatcccctcacc 81  Q
    ||||| |||||| ||||||||||||||||||||||||||||||    
T  14505575 cgaagatcttccgtgccttggactggggcaccatcccctcacc 14505533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 7173674 - 7173592
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||||| ||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  7173674 aggtaaatgtcaatacctttgtaagtgctctttgagcccgaaggtcttccctgcgttggactggggcaccatcccctcaccct 7173592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 51066536 - 51066618
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||| | ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  51066536 aggtaaatataattacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactggggcaccatcccctcaccct 51066618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 46494487 - 46494405
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| | ||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  46494487 aggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctaccttggactggggcaccatcccctcaccct 46494405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 36192584 - 36192666
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||| ||||| | |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  36192584 aggtaaatgtaattacttttgtaaatgctctttgagcccgaaggtcttccctaccttggactggggcaccatcccctcaccct 36192666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 22304175 - 22304098
Alignment:
Q  6 aatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    ||||||| ||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||    
T  22304175 aatgtcaatacctttgtaagtgctctttgagcccgaaggtcttccctaccttggactggggcaccatcctctcaccct 22304098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 29576458 - 29576540
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| | || |||||| |||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||    
T  29576458 aggtaaatgtaaataactttgtaagtgctctttgagcccgaaggtcttccctgccttggattggggcaccaccccctcaccct 29576540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 30970473 - 30970391
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| | ||||||||| |||||||||||| | |||||||||||||| |||| |||||||||||||||||||||||||    
T  30970473 aggtaaatgtaaatacctttgtaagtgctctttgagctcgaaggtcttccctaccttagactggggcaccatcccctcaccct 30970391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 32139207 - 32139289
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||||| |||| ||||||| || |||||||||| ||||||||||||||||||||||||| |||||||    
T  32139207 aggtaaatgtaattacctttgtaagtgttctttgagcctgaaggtcttctctgccttggactggggcaccatcccttcaccct 32139289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 51714054 - 51713972
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||| | | ||||||||| |||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||    
T  51714054 aggtaaatataaatacctttgtaagtgctctttgagcccgaaggtcttccctgctttgaactggggcaccatcccctcaccct 51713972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 55231730 - 55231812
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| | ||| ||||| |||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||    
T  55231730 aggtaaatgtaaatacttttgtaagtgctctttgagcctgaatgtcttccctgccttggactggggcaccatcccctcaccct 55231812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 39863865 - 39863785
Alignment:
Q  3 gtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||| || |||||||||| | ||| |||||||||||||    
T  39863865 gtaaatgtaattacctttgtaagtgctctttgaacccgaaggtcttctctaccttggactgagacactatcccctcaccct 39863785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 676771 - 676847
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccct 77  Q
    |||||| ||| | ||||||||| |||||||||||| |||||||||||||||||||||||||||   |||||||||||    
T  676771 aggtaagtgtaaatacctttgtaagtgctctttgagcccgaaggtcttccctgccttggactgtaacaccatcccct 676847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 2570272 - 2570326
Alignment:
Q  29 tctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||  |||||| |||||||||||||||||||||||||||||||||||||||    
T  2570272 tctttgagtccgaagatcttccctgccttggactggggcaccatcccctcaccct 2570326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 50905791 - 50905873
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| |||| ||||||  |||||||||||  ||||||||||||| ||||||| |||||||||||||||  |||||||    
T  50905791 aggtaaatgtaattatctttgtaggtgctctttgagtccgaaggtcttccatgccttgaactggggcaccatcctttcaccct 50905873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 8740491 - 8740550
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttgga 60  Q
    |||||||||| | ||||||||| |||||||||||| |||||||||||||| |||||||||    
T  8740491 aggtaaatgtaaatacctttgtaagtgctctttgagcccgaaggtcttccatgccttgga 8740550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 47627055 - 47627000
Alignment:
Q  28 ctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| ||||||||||||||||||||||||||  ||||||| |||||||||    
T  47627055 ctctttgaactcgaaggtcttccctgccttggactggaacaccatctcctcaccct 47627000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 2294774 - 2294723
Alignment:
Q  32 ttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||| |||||| |||||| ||||||| |||||||||||||||||||||||||    
T  2294774 ttgagcccgaaagtcttcactgccttagactggggcaccatcccctcaccct 2294723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 51066240 - 51066279
Alignment:
Q  44 gtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  51066240 gtcttccctgccttgaactggggcaccatcccctcaccct 51066279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 23084530 - 23084472
Alignment:
Q  25 gtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||||  ||||||||||||||| ||||| ||||||| |||||| |||||||||    
T  23084530 gtgctctttgagtccgaaggtcttccctaccttgaactggggtaccatctcctcaccct 23084472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 41523440 - 41523514
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatccc 75  Q
    |||||||||| | ||||||| | |||||||||||| | ||||||||||||||  |||||| |||| |||||||||    
T  41523440 aggtaaatgtaaatacctttataagtgctctttgagctcgaaggtcttccctatcttggattgggacaccatccc 41523514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 51279122 - 51279040
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||| ||||| | ||| ||||| |||||||||||| ||| |||||||||||  ||||||| |  |||||||||||||||||||    
T  51279122 aggtcaatgtaaatacttttgtaagtgctctttgagcccaaaggtcttcccaaccttggattaaggcaccatcccctcaccct 51279040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 28202647 - 28202598
Alignment:
Q  33 tgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccc 82  Q
    |||||||||||||||| |||| ||| |||||| |||||||||||||||||    
T  28202647 tgaacccgaaggtctttcctgtcttagactggagcaccatcccctcaccc 28202598  T

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Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 37990657 - 37990606
Alignment:
Q  28 ctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctca 79  Q
    |||||||| || |||| |||||||| ||||||||||||||||||| ||||||    
T  37990657 ctctttgagcctgaagatcttccctaccttggactggggcaccattccctca 37990606  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 4080641 - 4080564
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctc 78  Q
    |||||||||| ||||| ||||| | ||||||||||  | ||| |||||| ||| |||||| ||| |||||||||||||    
T  4080641 aggtaaatgtaattacatttgtaaatgctctttgagtctgaatgtcttctctgtcttggattggagcaccatcccctc 4080564  T

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Target: scaffold0021 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 107780 - 107700
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcacc 81  Q
    |||||||||| ||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  107780 aggtaaatgtaattacctttgtaagtgctctttgagcccgaaggtctaccctgccttggactggggcaccatcccctcacc 107700  T

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Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 17064366 - 17064448
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||| | ||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  17064366 aggtaaatgtaaatacctttgtaagtgctctttaagcccgaaggtcttccctgccttggactggggcaccatcccctcaccct 17064448  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 20983092 - 20983010
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    |||||||||  ||||| ||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||    
T  20983092 aggtaaatgcaattacatttgtaagtgctctttgagcccgaaagtcttccctgccttggactggggcaccatcccctcaccct 20983010  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 41910867 - 41910947
Alignment:
Q  1 aggtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcacc 81  Q
    |||||||||| |||| |||||| |||| ||||||| |||||| |||||| |||||||| ||||||||||||||||||||||    
T  41910867 aggtaaatgtaattaactttgtaagtgttctttgagcccgaatgtcttctctgccttgaactggggcaccatcccctcacc 41910947  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 37976606 - 37976675
Alignment:
Q  14 tacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    ||||||||| |||||| ||||| ||||||||| || ||||||||| ||||||||||||||||||||||||    
T  37976606 tacctttgtaagtgctatttgagcccgaaggtttttcctgccttgaactggggcaccatcccctcaccct 37976675  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 31673895 - 31673954
Alignment:
Q  24 agtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcaccct 83  Q
    ||||| |||||| ||| |||||| |||||||||||||||||||||||| |||||||||||    
T  31673895 agtgccctttgagccctaaggtcctccctgccttggactggggcaccaacccctcaccct 31673954  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 80
Target Start/End: Complemental strand, 35237102 - 35237069
Alignment:
Q  47 ttccctgccttggactggggcaccatcccctcac 80  Q
    ||||||||||||||||| ||||||||||||||||    
T  35237102 ttccctgccttggactgaggcaccatcccctcac 35237069  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 38031254 - 38031314
Alignment:
Q  21 gttagtgctctttgaacccgaaggtcttccctgccttggactggggcaccatcccctcacc 81  Q
    |||||||||||||||| ||| |||||||| ||| |||||||| ||||| ||| | ||||||    
T  38031254 gttagtgctctttgaatccgtaggtcttctctgtcttggactagggcatcatgcactcacc 38031314  T

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Target: scaffold0691 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 7056 - 6994
Alignment:
Q  3 gtaaatgtcattacctttgttagtgctctttgaacccgaaggtcttccctgccttggactggg 65  Q
    |||||||| ||||||||||  |||| |||||||  ||||||||||||||| ||||||||||||    
T  7056 gtaaatgtaattacctttgcaagtgttctttgagtccgaaggtcttccctaccttggactggg 6994  T

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Target: scaffold0128 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 256
Target Start/End: Complemental strand, 40646 - 40600
Alignment:
Q  210 atgaattggtttcacctctctctctaaagatttgtaccgagaattat 256  Q
    ||||||||||||||| | ||||||||||||| ||||| |||||||||    
T  40646 atgaattggtttcacttgtctctctaaagatctgtacggagaattat 40600  T

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