View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4166_high_22 (Length: 263)
Name: NF4166_high_22
Description: NF4166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4166_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 51845975 - 51845720
Alignment:
| Q |
1 |
ataaatgactataaaataacacatgaatgcaccaaatttgagatagaacaagctcattaaaggaaaagaaataaaatgtgacagcgttaccatgcaagac |
100 |
Q |
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| T |
51845975 |
ataaatgactataaaataacacatgaatgcaccaaatttgagatagaacaagctcattaaaggaaaagaaataaaatgtgacagcgttaccatgcaagac |
51845876 |
T |
|
| Q |
101 |
atataacaagcttcctttaggcatgtattcagtaacaaataacttctcctccctgcggtaatggtaagccaaaggagccaaaatattacggtttctaagc |
200 |
Q |
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| T |
51845875 |
atataacaagcttcctttaggcatgtattcagtaacaaataacttctcctccctgcggtaatggtaagccaaaggagccaaaatattacggtttctaagc |
51845776 |
T |
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| Q |
201 |
ctcccaaaccgtctcatctcggcatcaaatatatctctgcttactttattcatctc |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51845775 |
ctcccaaaccgtctcatctcggcatcaaatatatctctgcttactttattcatctc |
51845720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 88 - 229
Target Start/End: Original strand, 18628238 - 18628379
Alignment:
| Q |
88 |
taccatgcaagacatataacaagcttcctttaggcatgtattcagtaacaaataacttctcctccctgcggtaatggtaagccaaaggagccaaaatatt |
187 |
Q |
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|||| |||||||||||||||||||||||||||||| | || ||||||||||| | ||| ||||| | || ||||| ||||||||||||| ||||||||| |
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| T |
18628238 |
taccgtgcaagacatataacaagcttcctttaggcttatactcagtaacaaaaagcttttcctctcgacgataatgataagccaaaggagtcaaaatatt |
18628337 |
T |
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| Q |
188 |
acggtttctaagcctcccaaaccgtctcatctcggcatcaaa |
229 |
Q |
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| T |
18628338 |
agcatgtctaatcctcccaaactgtctcatctcagcatcaaa |
18628379 |
T |
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