View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4166_high_25 (Length: 252)
Name: NF4166_high_25
Description: NF4166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4166_high_25 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 2703677 - 2703901
Alignment:
| Q |
11 |
cacagagtcgagtagaagagtttcatcatcccacagatcatgagtttcattcatactatttgaaatttttaccaggtacattgatacacatt-aacatca |
109 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2703677 |
cacagagtcgagtaaaagagtttcatcatcccacagatcatgagtttcattcatactatttgaaatttttaccaggtacattgatacacatttaacatca |
2703776 |
T |
|
| Q |
110 |
tatgtattctatctgccttgcaagcttgtgacagttacactgttttttgagtcgtaattttgttgagctaagtcttctctatgctcaatcttgctttgaa |
209 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2703777 |
tatgtattctatctaccttgcaagcttgtgacagttacactgtttttcgagtcgtaattttgttgagctaagtcttctctatgctcaatcttgctttgaa |
2703876 |
T |
|
| Q |
210 |
tgaatgcaggttgagatggaggagg |
234 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
2703877 |
tgaatgcaggttgagatggaggagg |
2703901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 105 - 234
Target Start/End: Original strand, 2716387 - 2716516
Alignment:
| Q |
105 |
catcatatgtattctatctgccttgcaagcttgtgacagttacactgttttttgagtcgtaattttgttgagctaagtcttctctatgctcaatcttgct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||| |||||||||| || ||||| ||||||||||| ||| || |
|
|
| T |
2716387 |
catcatatgtattctatctgccttgcaagcttgtgacagtgacactgttattcgagtcgttattttgttgacctgagtctgctctatgctcagtctgact |
2716486 |
T |
|
| Q |
205 |
ttgaatgaatgcaggttgagatggaggagg |
234 |
Q |
| |
|
| ||| ||||||||||||||||||| |||| |
|
|
| T |
2716487 |
tagaaggaatgcaggttgagatggatgagg |
2716516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 105 - 234
Target Start/End: Original strand, 2723010 - 2723139
Alignment:
| Q |
105 |
catcatatgtattctatctgccttgcaagcttgtgacagttacactgttttttgagtcgtaattttgttgagctaagtcttctctatgctcaatcttgct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||| |||||||||| || ||||| ||||||||||| ||| || |
|
|
| T |
2723010 |
catcatatgtattctatctgccttgcaagcttgtgacagtgacactgttattcgagtcgttattttgttgacctgagtctgctctatgctcagtctgact |
2723109 |
T |
|
| Q |
205 |
ttgaatgaatgcaggttgagatggaggagg |
234 |
Q |
| |
|
| ||| ||||||||||||||||||| |||| |
|
|
| T |
2723110 |
tagaaggaatgcaggttgagatggatgagg |
2723139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 105 - 234
Target Start/End: Original strand, 2744844 - 2744970
Alignment:
| Q |
105 |
catcatatgtattctatctgccttgcaagcttgtgacagttacactgttttttgagtcgtaattttgttgagctaagtcttctctatgctcaatcttgct |
204 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |||||||| || ||||||| |||||||||| || ||||| ||||||||||| ||| || |
|
|
| T |
2744844 |
catcatatgtattcta---gccttgcaagcttgtgacagtgacactgttattcgagtcgttattttgttgacctgagtctgctctatgctcagtctgact |
2744940 |
T |
|
| Q |
205 |
ttgaatgaatgcaggttgagatggaggagg |
234 |
Q |
| |
|
| ||| ||||||||||||||||||| |||| |
|
|
| T |
2744941 |
tagaaggaatgcaggttgagatggatgagg |
2744970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University