View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4166_high_28 (Length: 238)

Name: NF4166_high_28
Description: NF4166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4166_high_28
NF4166_high_28
[»] chr2 (21 HSPs)
chr2 (19-112)||(33242202-33242295)
chr2 (19-112)||(33250123-33250216)
chr2 (147-222)||(6672862-6672937)
chr2 (147-222)||(25987731-25987806)
chr2 (147-222)||(40156028-40156103)
chr2 (152-222)||(45137039-45137109)
chr2 (147-222)||(44650381-44650456)
chr2 (147-222)||(5039408-5039483)
chr2 (147-222)||(36836398-36836473)
chr2 (148-222)||(21637886-21637960)
chr2 (147-211)||(2357155-2357219)
chr2 (147-211)||(7860226-7860290)
chr2 (147-222)||(10745301-10745376)
chr2 (147-222)||(17136375-17136450)
chr2 (147-222)||(36380201-36380276)
chr2 (147-222)||(2754120-2754195)
chr2 (148-211)||(30372760-30372823)
chr2 (148-192)||(2098939-2098983)
chr2 (151-222)||(3200873-3200944)
chr2 (147-222)||(26690142-26690217)
chr2 (182-222)||(558508-558548)
[»] chr8 (10 HSPs)
chr8 (147-222)||(19723299-19723374)
chr8 (147-222)||(27881057-27881132)
chr8 (147-222)||(28021238-28021313)
chr8 (148-218)||(4840129-4840199)
chr8 (147-222)||(32296708-32296783)
chr8 (147-209)||(29767176-29767238)
chr8 (147-222)||(11403989-11404064)
chr8 (147-222)||(24475065-24475140)
chr8 (182-222)||(17095573-17095613)
chr8 (147-222)||(22711497-22711572)
[»] chr7 (14 HSPs)
chr7 (147-222)||(16059422-16059497)
chr7 (147-222)||(35109679-35109754)
chr7 (147-222)||(38265306-38265381)
chr7 (147-221)||(41151160-41151234)
chr7 (147-222)||(18117013-18117088)
chr7 (147-222)||(34721822-34721897)
chr7 (148-222)||(45278441-45278515)
chr7 (147-222)||(21577167-21577242)
chr7 (153-222)||(12472115-12472184)
chr7 (147-222)||(11216757-11216832)
chr7 (147-222)||(38405223-38405298)
chr7 (151-211)||(48176391-48176451)
chr7 (160-221)||(23028684-23028745)
chr7 (182-222)||(37095279-37095319)
[»] chr3 (15 HSPs)
chr3 (147-222)||(7417786-7417861)
chr3 (147-222)||(8400843-8400918)
chr3 (147-222)||(35198753-35198828)
chr3 (150-222)||(50823689-50823761)
chr3 (150-222)||(50852099-50852171)
chr3 (147-222)||(22855875-22855950)
chr3 (147-211)||(52545309-52545373)
chr3 (151-222)||(34824548-34824619)
chr3 (183-222)||(29635892-29635931)
chr3 (153-211)||(43334134-43334192)
chr3 (147-211)||(48078021-48078085)
chr3 (150-222)||(55467990-55468062)
chr3 (147-222)||(50726066-50726141)
chr3 (147-222)||(50786707-50786782)
chr3 (151-195)||(39438915-39438959)
[»] chr1 (11 HSPs)
chr1 (150-222)||(30054511-30054583)
chr1 (147-222)||(4573367-4573442)
chr1 (151-222)||(20014450-20014521)
chr1 (147-222)||(45323994-45324069)
chr1 (153-222)||(30370129-30370198)
chr1 (147-211)||(21090103-21090167)
chr1 (151-222)||(12025173-12025244)
chr1 (147-222)||(33763323-33763398)
chr1 (151-222)||(30850909-30850980)
chr1 (171-222)||(44438619-44438670)
chr1 (147-205)||(15034443-15034501)
[»] chr4 (12 HSPs)
chr4 (147-222)||(39863847-39863922)
chr4 (147-222)||(51066481-51066556)
chr4 (147-222)||(8740436-8740511)
chr4 (147-222)||(32139152-32139227)
chr4 (147-222)||(46494467-46494542)
chr4 (147-222)||(51714034-51714109)
chr4 (147-222)||(30970453-30970528)
chr4 (147-222)||(36192529-36192604)
chr4 (147-222)||(50905736-50905811)
chr4 (147-222)||(7173654-7173729)
chr4 (147-217)||(2294784-2294854)
chr4 (153-211)||(47627073-47627133)
[»] scaffold0021 (1 HSPs)
scaffold0021 (147-222)||(107760-107835)
[»] chr5 (4 HSPs)
chr5 (147-222)||(17064311-17064386)
chr5 (147-209)||(37976534-37976596)
chr5 (147-210)||(20983084-20983147)
chr5 (150-211)||(35237103-35237164)
[»] chr6 (6 HSPs)
chr6 (115-222)||(19686896-19687002)
chr6 (148-211)||(14496341-14496404)
chr6 (147-222)||(35163819-35163894)
chr6 (147-222)||(2711803-2711878)
chr6 (182-222)||(20685348-20685388)
chr6 (153-211)||(14505603-14505661)
[»] scaffold0691 (1 HSPs)
scaffold0691 (161-223)||(7037-7099)


Alignment Details
Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 33242202 - 33242295
Alignment:
Q  19 gaaggatgtctttgtgaatggagcttggaattttaatcatatccacacaactctccctgcatctatcacagatagcttgaaaacgctccccatt 112  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||  |||||||||    
T  33242202 gaaggatgtcttcgtgaatggagcttggaattttaatcatatctacacaactctccctgcatctattacagatagcttgaaaattctccccatt 33242295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 33250123 - 33250216
Alignment:
Q  19 gaaggatgtctttgtgaatggagcttggaattttaatcatatccacacaactctccctgcatctatcacagatagcttgaaaacgctccccatt 112  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||  |||||||||    
T  33250123 gaaggatgtcttcgtgaatggagcttggaattttaatcatatctacacaactctccctgcatctattacagatagcttgaaaattctccccatt 33250216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 6672937 - 6672862
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||||||||||||||||||||| | | ||||||||||||||| |||||||||||||| ||||||||||    
T  6672937 caggtcttgaatccgagagaacccgggttcaagccccgctagtgcctttggagggaggtaaatgtaattacctttg 6672862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 25987806 - 25987731
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||||||||||||| ||||||||| | ||||||||||||||| |||||||||||||| ||||||||||    
T  25987806 caggtcttgaatccgagagaactcgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttg 25987731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 40156028 - 40156103
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    ||||||||||||||||||||| |||||||||| | ||||||||||||||| |||||||||||||| ||||||||||    
T  40156028 caggtcttgaatccgagagaatccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttg 40156103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 45137109 - 45137039
Alignment:
Q  152 cttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    ||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| ||||||||||    
T  45137109 cttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttg 45137039  T

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Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 44650381 - 44650456
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||||||||||||||||  ||||| ||||| ||||||||||| |||||||||||||| ||||||||||    
T  44650381 caggtcttgaatccgagagaacccgatttcgagctccgttagtgcctttggagggaggtaaatgtaattacctttg 44650456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 5039408 - 5039483
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||||||||||||| ||||||||| |||||||||||| |||  ||||||||||| || ||||||||||    
T  5039408 caggtcttgaatccgagagaactcgggttcgagctccgctagtgcttttagagggaggtaaacgtaattacctttg 5039483  T

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Target: chr2; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 36836473 - 36836398
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    ||||||||||||||||||||||||| ||||||   ||||| ||||||||| |||||||||||||| ||||||||||    
T  36836473 caggtcttgaatccgagagaacccgagttcgagtcccgctggtgcctttggagggaggtaaatgtaattacctttg 36836398  T

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Target: chr2; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 148 - 222
Target Start/End: Original strand, 21637886 - 21637960
Alignment:
Q  148 aggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    ||||||||||| |||||||||||||||| || | ||||||||||||||| |||||||||||||| | ||||||||    
T  21637886 aggtcttgaattcgagagaacccgggtttgagccccgctagtgcctttggagggaggtaaatgtaaatacctttg 21637960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 2357219 - 2357155
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgt 211  Q
    ||||||||||||||||||||||||||||||||  ||| ||||| |||||| ||||||||||||||    
T  2357219 caggtcttgaatccgagagaacccgggttcgagttccactagtacctttggagggaggtaaatgt 2357155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 7860290 - 7860226
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgt 211  Q
    ||||||||||||||||||||||| ||||| || | ||||||||||||||| ||||||||||||||    
T  7860290 caggtcttgaatccgagagaacctgggtttgagccccgctagtgcctttggagggaggtaaatgt 7860226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 10745376 - 10745301
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||| ||||||||||||||| ||| | ||||||||||||||  |||||||||||||| |||| |||||    
T  10745376 caggtcttgaattcgagagaacccgggtccgagccccgctagtgcctttagagggaggtaaatgtaattatctttg 10745301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 17136375 - 17136450
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    ||||| ||||||| |||||||||||||||||| | ||| ||||||||||| |||||||||||||| | ||||||||    
T  17136375 caggttttgaatctgagagaacccgggttcgagccccgttagtgcctttggagggaggtaaatgtaaatacctttg 17136450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 36380276 - 36380201
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||| ||||| ||| |||||| |||| ||||||||||||||| |||||||||||||| ||| ||||||    
T  36380276 caggtcttgaattcgagaaaactcgggtttgaaccccgctagtgcctttggagggaggtaaatgtaattccctttg 36380201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 2754195 - 2754120
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||||||||||||||||| |||||   || ||| |||||||| |||||||||||||| | ||||||||    
T  2754195 caggtcttgaatccgagagaacccggattcgagtcccactaatgcctttggagggaggtaaatgtaaatacctttg 2754120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 30372823 - 30372760
Alignment:
Q  148 aggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgt 211  Q
    ||||||||||| ||||||| || |||||||| ||||||||||||||||| | ||||||||||||    
T  30372823 aggtcttgaattcgagagatcctgggttcgagctccgctagtgcctttggaaggaggtaaatgt 30372760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 2098983 - 2098939
Alignment:
Q  148 aggtcttgaatccgagagaacccgggttcgaactccgctagtgcc 192  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||    
T  2098983 aggtcttgaattcgagagaacccaggttcgaactccgctagtgcc 2098939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 3200873 - 3200944
Alignment:
Q  151 tcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||  |||||||| || ||||| |  |||||||||||||| |||||||||||||| ||||||||||    
T  3200873 tcttgaatctaagagaacctggattcgagcctcgctagtgcctttggagggaggtaaatgtaattacctttg 3200944  T

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Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 26690142 - 26690217
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    ||||| || ||| |||||||| | ||||||||   |||||||||| |||| |||||||||||||| ||||||||||    
T  26690142 caggttttaaattcgagagaatctgggttcgagtcccgctagtgcttttggagggaggtaaatgtaattacctttg 26690217  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 558548 - 558508
Alignment:
Q  182 ccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    ||||||||||||||| |||||||||||||| ||||| ||||    
T  558548 ccgctagtgcctttggagggaggtaaatgtaattacttttg 558508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 19723299 - 19723374
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| ||||||||||    
T  19723299 caggtcttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttg 19723374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 27881132 - 27881057
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    ||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||| | ||||||||    
T  27881132 caggtcttgaatctgagagaacccgggttcgagccccgctagtgcctttgaagggaggtaaatgtaaatacctttg 27881057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 28021313 - 28021238
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    ||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||| | ||||||||    
T  28021313 caggtcttgaatctgagagaacccgggttcgagccccgctagtgcctttgaagggaggtaaatgtaaatacctttg 28021238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 4840129 - 4840199
Alignment:
Q  148 aggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacc 218  Q
    |||| |||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||    
T  4840129 aggttttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtcattacc 4840199  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 32296783 - 32296708
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    ||||||||||||  |||||||||||||||| | | | |||||||||||||||||||||||||||| ||||||||||    
T  32296783 caggtcttgaatttgagagaacccgggttcaagccctgctagtgcctttgaagggaggtaaatgtaattacctttg 32296708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 29767176 - 29767238
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaat 209  Q
    ||||||||||||| ||||||||||||| |||| | ||||||||||||||||||||||||||||    
T  29767176 caggtcttgaatctgagagaacccggggtcgagccccgctagtgcctttgaagggaggtaaat 29767238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 11403989 - 11404064
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||| |||||||||| |||||||| |  |||||||| ||||| |||||||||||||| | ||||||||    
T  11403989 caggtcttgaattcgagagaacctgggttcgagcctcgctagtgtctttggagggaggtaaatgtaaatacctttg 11404064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 24475140 - 24475065
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||||||| ||||  ||  ||||| ||||||||||||||||| |||||||||||||| | ||||||||    
T  24475140 caggtcttgaatccgatagaattcgaattcgagctccgctagtgcctttggagggaggtaaatgtaaatacctttg 24475065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 17095573 - 17095613
Alignment:
Q  182 ccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  17095573 ccgctagtgcctttggagggaggtaaatgtaattacctttg 17095613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 22711497 - 22711572
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||||||||||||| |||||| ||   |  ||| |||||||| |||||||||||||| | ||||||||    
T  22711497 caggtcttgaatccgagagaactcgggtttgagtccaactaatgcctttggagggaggtaaatgtaaatacctttg 22711572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 16059497 - 16059422
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| ||||||||||    
T  16059497 caggtcttgaatccgagagaacccgggttcgagccccgctagtgcctttgcagggaggtaaatgtaattacctttg 16059422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 35109679 - 35109754
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||||||||||||||||||||||| | || |||||||||||| |||||||||||||| ||||||||||    
T  35109679 caggtcttgaatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaattacctttg 35109754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 38265381 - 38265306
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    ||||||||||||||||||||||| |||||||| | ||||||||||||||| |||||||||||||| ||||||||||    
T  38265381 caggtcttgaatccgagagaacctgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttg 38265306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 41151160 - 41151234
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattaccttt 221  Q
    |||||||||||||||||||||||||||||||| | ||||||||| ||||| |||||||||||||| |||||||||    
T  41151160 caggtcttgaatccgagagaacccgggttcgagccccgctagtgtctttggagggaggtaaatgtaattaccttt 41151234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 18117088 - 18117013
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||||||||||||||||||||||| |  |||||||||||||  |||||||||||||| ||||||||||    
T  18117088 caggtcttgaatccgagagaacccgggttcgagccacgctagtgcctttagagggaggtaaatgtaattacctttg 18117013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 34721822 - 34721897
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||||||||||||||||| ||| | | ||||||||||||||| |||||||||||||| ||||||||||    
T  34721822 caggtcttgaatccgagagaacccggattcaagccccgctagtgcctttggagggaggtaaatgtaattacctttg 34721897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 148 - 222
Target Start/End: Original strand, 45278441 - 45278515
Alignment:
Q  148 aggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    ||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| |||||||| |||| |||||    
T  45278441 aggtcttgaatccgagataacccgggttcgagccccgctagtgcctttgaagggaagtaaatgtaattatctttg 45278515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 21577242 - 21577167
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||||||||||||||||||||||| | || ||| |||||||| |||||||||||||| | ||||||||    
T  21577242 caggtcttgaatccgagagaacccgggttcgagccccactaatgcctttggagggaggtaaatgtaaatacctttg 21577167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 12472115 - 12472184
Alignment:
Q  153 ttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||||||||||||||||| | || |||||||||||| |||||||||||| | ||||||||||    
T  12472115 ttgaatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatataattacctttg 12472184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 11216757 - 11216832
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    ||||||||||||| |||||||||||||||||| | ||  ||||||||||| |||||||||||||| | ||||||||    
T  11216757 caggtcttgaatctgagagaacccgggttcgagccccattagtgcctttggagggaggtaaatgtaaatacctttg 11216832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 38405298 - 38405223
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||||||||||||  || |||||| |  |||||||||||||| |||||||||||||| |||| |||||    
T  38405298 caggtcttgaatccgagagaattcgagttcgagcctcgctagtgcctttggagggaggtaaatgtaattatctttg 38405223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 48176391 - 48176451
Alignment:
Q  151 tcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgt 211  Q
    |||| |||||||||||| |||||||||| | ||||||||||||||| | ||||||||||||    
T  48176391 tcttaaatccgagagaatccgggttcgagccccgctagtgcctttggaaggaggtaaatgt 48176451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 23028684 - 23028745
Alignment:
Q  160 cgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattaccttt 221  Q
    |||||||| ||||||||||||||| ||| |||||||  ||||| |||||||| |||||||||    
T  23028684 cgagagaatccgggttcgaactcctctaatgcctttagagggatgtaaatgtaattaccttt 23028745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 37095319 - 37095279
Alignment:
Q  182 ccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    ||||||||| ||||| |||||||||||||| ||||||||||    
T  37095319 ccgctagtgtctttggagggaggtaaatgtaattacctttg 37095279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 7417786 - 7417861
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| ||||||||||    
T  7417786 caggtcttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttg 7417861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 8400843 - 8400918
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| ||||||||||    
T  8400843 caggtcttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttg 8400918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 35198753 - 35198828
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||||||||||||||||||||||| | || ||| |||||||| |||||||||||||| | ||||||||    
T  35198753 caggtcttgaatccgagagaacccgggttcgagccccactaatgcctttgcagggaggtaaatgtaaatacctttg 35198828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 50823689 - 50823761
Alignment:
Q  150 gtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||||||||| ||||||||||   ||| ||||||||||| |||||||||||||| ||||||||||    
T  50823689 gtcttgaatccgagagaatccgggttcgagtcccgttagtgcctttggagggaggtaaatgtaattacctttg 50823761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 50852171 - 50852099
Alignment:
Q  150 gtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||||||||| ||||||||||   ||| ||||||||||| |||||||||||||| ||||||||||    
T  50852171 gtcttgaatccgagagaatccgggttcgagtcccgttagtgcctttggagggaggtaaatgtaattacctttg 50852099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 22855875 - 22855950
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||| ||| ||||||||||| ||||||| | ||||||||| ||||| |||||||||||||| ||||||||||    
T  22855875 caggtcttaaattcgagagaacccaggttcgagccccgctagtgtctttggagggaggtaaatgtaattacctttg 22855950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 52545309 - 52545373
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgt 211  Q
    |||||||||||||||||| ||  ||||||||| | |||||||||||||| |||||||||||||||    
T  52545309 caggtcttgaatccgagaaaattcgggttcgagccccgctagtgcctttaaagggaggtaaatgt 52545373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 34824548 - 34824619
Alignment:
Q  151 tcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    ||||||||||||||||||| | ||||||   ||| |||||||||||||||||||||||||| |||| |||||    
T  34824548 tcttgaatccgagagaacctgagttcgagtcccgttagtgcctttgaagggaggtaaatgtaattatctttg 34824619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 29635892 - 29635931
Alignment:
Q  183 cgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  29635892 cgctagtgcctttgaagggaggtaaatgtaattacctttg 29635931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 43334192 - 43334134
Alignment:
Q  153 ttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgt 211  Q
    ||||||||||||||||||| |||||| | ||||||||| ||| | ||||||||||||||    
T  43334192 ttgaatccgagagaacccgagttcgagccccgctagtgtcttgggagggaggtaaatgt 43334134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 48078085 - 48078021
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgt 211  Q
    |||||||||||| ||||||||| ||||||||| |  | |||||||||||| ||| ||||||||||    
T  48078085 caggtcttgaattcgagagaactcgggttcgagcctcactagtgcctttggaggaaggtaaatgt 48078021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 55467990 - 55468062
Alignment:
Q  150 gtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    ||||||||| |||||||| |||||||||| | || ||| ||| |||| |||||||||||||| | ||||||||    
T  55467990 gtcttgaattcgagagaatccgggttcgagccccactaatgcgtttggagggaggtaaatgtaaatacctttg 55468062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 50726141 - 50726066
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||||||||||||  ||||||||| | ||| ||||| ||||| ||| |||||||| | ||||| ||||    
T  50726141 caggtcttgaatccgagagaattcgggttcgagccccgttagtgtctttggaggaaggtaaatataattacttttg 50726066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 50786707 - 50786782
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||||||||||||  ||||||||| | ||| ||||| ||||| ||| |||||||| | ||||| ||||    
T  50786707 caggtcttgaatccgagagaattcgggttcgagccccgttagtgtctttggaggaaggtaaatataattacttttg 50786782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 39438959 - 39438915
Alignment:
Q  151 tcttgaatccgagagaacccgggttcgaactccgctagtgccttt 195  Q
    ||||||||||||||||| || ||||| || |||||||||||||||    
T  39438959 tcttgaatccgagagaatccaggttcaaattccgctagtgccttt 39438915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 150 - 222
Target Start/End: Complemental strand, 30054583 - 30054511
Alignment:
Q  150 gtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||| ||||||||||    
T  30054583 gtcttgaatccgagagaacccgggttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttg 30054511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 4573367 - 4573442
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||||||||||||||||||||||| | || ||| || ||||| |||||||||||||| | ||||||||    
T  4573367 caggtcttgaatccgagagaacccgggttcgagccccactaatgtctttggagggaggtaaatgtaaatacctttg 4573442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 20014450 - 20014521
Alignment:
Q  151 tcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    ||||||||||||||||||||||||||||   |||||||| |||||| |||||||||||||| ||||| ||||    
T  20014450 tcttgaatccgagagaacccgggttcgagtcccgctagtacctttggagggaggtaaatgtaattacatttg 20014521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 45323994 - 45324069
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    ||||||||||||||||||||||| |||||| | | |||||||||| |||| |||||||||||||| | ||||||||    
T  45323994 caggtcttgaatccgagagaacctgggttccagccccgctagtgcttttggagggaggtaaatgtaaatacctttg 45324069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 30370198 - 30370129
Alignment:
Q  153 ttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||| |||||||| |||||||||| | || |||||| ||||| |||||||||||||| ||||||||||    
T  30370198 ttgaattcgagagaatccgggttcgagccccactagtgtctttggagggaggtaaatgtaattacctttg 30370129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 21090103 - 21090167
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgt 211  Q
    |||||||||||| ||||||||  ||||||||| | ||||||||||| ||| ||||||||||||||    
T  21090103 caggtcttgaattcgagagaattcgggttcgagccccgctagtgccgttggagggaggtaaatgt 21090167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 12025173 - 12025244
Alignment:
Q  151 tcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||| |||||||||| |||||||| | ||  ||||||||||| ||| |||||||||| ||||||||||    
T  12025173 tcttgaattcgagagaacctgggttcgagccccattagtgcctttggaggaaggtaaatgtaattacctttg 12025244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 33763398 - 33763323
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||| |||||||| |  ||||||| | ||||||||||||||  ||||||| |||||| ||||||||||    
T  33763398 caggtcttgaattcgagagaatctaggttcgagccccgctagtgcctttagagggaggcaaatgtaattacctttg 33763323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 222
Target Start/End: Complemental strand, 30850980 - 30850909
Alignment:
Q  151 tcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||| ||||||||||||| ||||||||| | ||| ||||| ||||| |||||||||||| | ||| ||||||    
T  30850980 tcttaaatccgagagaactcgggttcgagccccgttagtgtctttggagggaggtaaatataattgcctttg 30850909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 44438670 - 44438619
Alignment:
Q  171 gggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||| |||||||| |||||||| |||||||||||||| ||||| ||||    
T  44438670 gggttcgagctccgctaatgcctttggagggaggtaaatgtaattacttttg 44438619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 205
Target Start/End: Original strand, 15034443 - 15034501
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggt 205  Q
    |||||||||||||||| ||||||| ||||||| | |  |||||||||||| ||||||||    
T  15034443 caggtcttgaatccgaaagaacccaggttcgagccctactagtgcctttggagggaggt 15034501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 39863922 - 39863847
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||| ||||| |||||||| ||||||||||    
T  39863922 caggtcttgaatccgagagaacccgggttcggaccccgctagtgcctttggagggaagtaaatgtaattacctttg 39863847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 51066481 - 51066556
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||| | ||||||||||    
T  51066481 caggtcttgaatccgagagaactcgggttcgagctccgctagtgcctttggagggaggtaaatataattacctttg 51066556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 8740436 - 8740511
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||||||||| | ||||||||    
T  8740436 caggtcttgaatccgagagatcccgggttcgagccccgctagtgcctttggagggaggtaaatgtaaatacctttg 8740511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 32139152 - 32139227
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||| |||||||||||||||| |||||||||| ||||||||| ||||| |||||||||||||| ||||||||||    
T  32139152 caggtcatgaatccgagagaacctgggttcgaaccccgctagtgtctttggagggaggtaaatgtaattacctttg 32139227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 46494542 - 46494467
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||||||||||||||||||||||| | || |||||||||||| |||||||||||||| | ||||||||    
T  46494542 caggtcttgaatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaaatacctttg 46494467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 51714109 - 51714034
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||| | | ||||||||    
T  51714109 caggtcttgaatccgagagaacccgggttcgagccccactagtgcctttgaagggaggtaaatataaatacctttg 51714034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 30970528 - 30970453
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    ||||||||||||||||||||| |||||||||| |  | ||||||||||||||||||||||||||| | ||||||||    
T  30970528 caggtcttgaatccgagagaatccgggttcgagcctcactagtgcctttgaagggaggtaaatgtaaatacctttg 30970453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 36192529 - 36192604
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||| ||||||||||||||||||| | || |||||||||||| |||||||||||||| ||||| ||||    
T  36192529 caggtcttgaattcgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgtaattacttttg 36192604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 50905736 - 50905811
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    ||||||||||||||||||||| | |||||||| | ||||||||||||||| || ||||||||||| |||| |||||    
T  50905736 caggtcttgaatccgagagaatctgggttcgagccccgctagtgcctttggagagaggtaaatgtaattatctttg 50905811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 7173729 - 7173654
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||||||||||||||  ||||| |   ||||||||||||||| | |||||||||||||| ||||||||    
T  7173729 caggtcttgaatccgagagaacctaggttcaagacccgctagtgcctttggaaggaggtaaatgtcaatacctttg 7173654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 217
Target Start/End: Complemental strand, 2294854 - 2294784
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattac 217  Q
    |||||||||||| ||||||||| |||||||||  | |||||||||||||| ||| |||||||||| |||||    
T  2294854 caggtcttgaattcgagagaactcgggttcgagtttcgctagtgcctttggaggaaggtaaatgtaattac 2294784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 47627133 - 47627073
Alignment:
Q  153 ttgaatccgagagaacccgggttcgaa--ctccgctagtgcctttgaagggaggtaaatgt 211  Q
    |||||||||||||||||||| |||||   | || |||||||||||||||||||||||||||    
T  47627133 ttgaatccgagagaacccggattcgagagccccactagtgcctttgaagggaggtaaatgt 47627073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 107835 - 107760
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||| |||||||||||| |||||| | ||||||||||||||| |||||||||||||| ||||||||||    
T  107835 caggtcttgaattcgagagaacccgagttcgagccccgctagtgcctttggagggaggtaaatgtaattacctttg 107760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 17064311 - 17064386
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||||||||||||||||||||||| |  |||||||||||||| |||||||||||||| | ||||||||    
T  17064311 caggtcttgaatccgagagaacccgggttcgagcctcgctagtgcctttggagggaggtaaatgtaaatacctttg 17064386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 37976534 - 37976596
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaat 209  Q
    ||||||||||||||||||||||| |||||||| | |||||||||| |||||||||||||||||    
T  37976534 caggtcttgaatccgagagaacctgggttcgagccccgctagtgcatttgaagggaggtaaat 37976596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 20983147 - 20983084
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatg 210  Q
    |||||||||||||| |||||| |||||||||| | ||||||||||||| | || ||||||||||    
T  20983147 caggtcttgaatccaagagaatccgggttcgagccccgctagtgccttcggagagaggtaaatg 20983084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 35237164 - 35237103
Alignment:
Q  150 gtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgt 211  Q
    ||||||||| |||||||| | || ||||| | ||||||||| ||||||||||||||||||||    
T  35237164 gtcttgaattcgagagaatctggattcgagccccgctagtgtctttgaagggaggtaaatgt 35237103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 19687002 - 19686896
Alignment:
Q  115 cttcaaaaggtttggtctagtggtnnnnnnnncaggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcat 214  Q
    ||||||||||||||||||||||||        ||||||||||||| ||||||||| |||||||| | || |||||||||||| |||||||||||||| ||    
T  19687002 cttcaaaaggtttggtctagtggtaaaaaaa-caggtcttgaatctgagagaacctgggttcgagcccctctagtgcctttgtagggaggtaaatgtaat 19686904  T
Q  215 tacctttg 222  Q
    ||||||||    
T  19686903 tacctttg 19686896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 14496341 - 14496404
Alignment:
Q  148 aggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgt 211  Q
    ||||||||||||||||||||||||||||||| | || |||||||||||| ||||||||||||||    
T  14496341 aggtcttgaatccgagagaacccgggttcgagccccactagtgcctttggagggaggtaaatgt 14496404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 35163894 - 35163819
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    ||||||||||||||||||||||| |||||||| | || ||| |||||||| |||||||||||||| | ||||||||    
T  35163894 caggtcttgaatccgagagaaccagggttcgagccccactaatgcctttggagggaggtaaatgtaaatacctttg 35163819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 2711878 - 2711803
Alignment:
Q  147 caggtcttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    |||||||||||||||| |||||| || ||||| | || ||||||| |||| |||||||||||||| | ||||||||    
T  2711878 caggtcttgaatccgatagaacctggattcgagccccactagtgcttttggagggaggtaaatgtaaatacctttg 2711803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 20685348 - 20685388
Alignment:
Q  182 ccgctagtgcctttgaagggaggtaaatgtcattacctttg 222  Q
    ||||||||||||||| |||||||||||||| ||||||||||    
T  20685348 ccgctagtgcctttggagggaggtaaatgtaattacctttg 20685388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 14505661 - 14505603
Alignment:
Q  153 ttgaatccgagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgt 211  Q
    |||||||||||||| ||||  ||||| | |||||||||| |||| ||||||||||||||    
T  14505661 ttgaatccgagagatcccgaattcgagccccgctagtgcttttggagggaggtaaatgt 14505603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 7099 - 7037
Alignment:
Q  161 gagagaacccgggttcgaactccgctagtgcctttgaagggaggtaaatgtcattacctttgc 223  Q
    ||||||| ||||||||||   |||||||||| |||| ||||| |||||||| |||||||||||    
T  7099 gagagaatccgggttcgagtcccgctagtgcgtttggagggaagtaaatgtaattacctttgc 7037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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