View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4166_high_35 (Length: 229)

Name: NF4166_high_35
Description: NF4166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4166_high_35
NF4166_high_35
[»] chr3 (2 HSPs)
chr3 (1-229)||(36743975-36744208)
chr3 (188-220)||(35722340-35722372)
[»] chr8 (8 HSPs)
chr8 (183-228)||(6392095-6392140)
chr8 (183-226)||(6264930-6264973)
chr8 (183-228)||(6364472-6364517)
chr8 (183-224)||(6411259-6411300)
chr8 (183-228)||(7460671-7460716)
chr8 (173-211)||(6458252-6458290)
chr8 (183-228)||(6353599-6353644)
chr8 (183-228)||(6425289-6425334)
[»] chr2 (1 HSPs)
chr2 (177-226)||(42694385-42694434)
[»] chr1 (1 HSPs)
chr1 (74-196)||(36923579-36923701)


Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 36744208 - 36743975
Alignment:
Q  1 gtaaaaagtttcaattatatattactaagaaaa-----agttgagagcaattaacgtagagattaactaactaactaactaacctgttttggtcggtttt 95  Q
    |||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36744208 gtaaaaagtttcaattatatattactaagaaaagaaaaagttgagagcaattaacgtagagattaactaactaactaactaacctgttttggtcggtttt 36744109  T
Q  96 ctgcaggttcttcccctgcgaggatagggaaatttagaagaacctccgagaatcggacgagcaaggtctcgactcttatctggatttcccaaatcattgt 195  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36744108 ctgcaggttcttcccctacgaggatagggaaatttagaagaacctccgagaatcggacgagcaaggtctcgactcttatctggatttcccaaatcattgt 36744009  T
Q  196 aaacatcataatcatagattctgtcccattcctc 229  Q
    ||||||||||||||||||||||||||||||||||    
T  36744008 aaacatcataatcatagattctgtcccattcctc 36743975  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 220
Target Start/End: Complemental strand, 35722372 - 35722340
Alignment:
Q  188 atcattgtaaacatcataatcatagattctgtc 220  Q
    ||||||||| |||||||||||||||||||||||    
T  35722372 atcattgtagacatcataatcatagattctgtc 35722340  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 6392095 - 6392140
Alignment:
Q  183 cccaaatcattgtaaacatcataatcatagattctgtcccattcct 228  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||    
T  6392095 cccaaatcattgtagacatcataatcatatattctgtcccattcct 6392140  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 226
Target Start/End: Original strand, 6264930 - 6264973
Alignment:
Q  183 cccaaatcattgtaaacatcataatcatagattctgtcccattc 226  Q
    ||||||||||||||||||||||||||||| | ||||||||||||    
T  6264930 cccaaatcattgtaaacatcataatcataaactctgtcccattc 6264973  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 6364472 - 6364517
Alignment:
Q  183 cccaaatcattgtaaacatcataatcatagattctgtcccattcct 228  Q
    |||||||||||||| |||||||||||||| ||||| ||||||||||    
T  6364472 cccaaatcattgtagacatcataatcatatattctttcccattcct 6364517  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 224
Target Start/End: Original strand, 6411259 - 6411300
Alignment:
Q  183 cccaaatcattgtaaacatcataatcatagattctgtcccat 224  Q
    |||||||||||||| |||||||||||||| ||||||||||||    
T  6411259 cccaaatcattgtagacatcataatcatatattctgtcccat 6411300  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 7460671 - 7460716
Alignment:
Q  183 cccaaatcattgtaaacatcataatcatagattctgtcccattcct 228  Q
    ||||| |||||||| |||||||||||||| ||||||||||||||||    
T  7460671 cccaagtcattgtagacatcataatcatatattctgtcccattcct 7460716  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 6458252 - 6458290
Alignment:
Q  173 atctggatttcccaaatcattgtaaacatcataatcata 211  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  6458252 atctggatttcccaaatcattataaatatcataatcata 6458290  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 6353599 - 6353644
Alignment:
Q  183 cccaaatcattgtaaacatcataatcatagattctgtcccattcct 228  Q
    |||||||||||||| ||||| |||||||| ||||| ||||||||||    
T  6353599 cccaaatcattgtagacatcgtaatcatatattctttcccattcct 6353644  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 6425289 - 6425334
Alignment:
Q  183 cccaaatcattgtaaacatcataatcatagattctgtcccattcct 228  Q
    |||||||||||||| ||||| ||||||||||| || ||||||||||    
T  6425289 cccaaatcattgtagacatcgtaatcatagatcctttcccattcct 6425334  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 42694385 - 42694434
Alignment:
Q  177 ggatttcccaaatcattgtaaacatcataatcatagattctgtcccattc 226  Q
    |||||||| ||||||||||| |||||||||||||||||||| ||||||||    
T  42694385 ggatttcctaaatcattgtagacatcataatcatagattctttcccattc 42694434  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 196
Target Start/End: Complemental strand, 36923701 - 36923579
Alignment:
Q  74 ctaacctgttttggtcggttttctgcaggttcttcccctgcgaggatagggaaatttagaagaacctccgagaatcggacgagcaaggtctcgactctta 173  Q
    |||||||| |||||  |||| |||||  ||||||||||||||||| || ||| ||| || ||| ||||| ||||| ||||||| | | ||  |||  |||    
T  36923701 ctaacctgatttggcaggttctctgccagttcttcccctgcgagggtaaggatattcagcagaccctccaagaataggacgagaatgttcaagaccttta 36923602  T
Q  174 tctggatttcccaaatcattgta 196  Q
    || ||||||||||||||||||||    
T  36923601 tcaggatttcccaaatcattgta 36923579  T

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