View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4166_high_6 (Length: 606)
Name: NF4166_high_6
Description: NF4166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4166_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-153; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 2349168 - 2348867
Alignment:
| Q |
18 |
atttatcagctaatggacctaaaactctgtggggtggttgtttgccactaaaaattgggaggtgaccaagtattggccatgcacctttagctatgggtgc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2349168 |
atttatcagctaatggacctaaaactctgtggggtggttgtttgccactaaaaattgggaggtgaccaagtattggccatgcacctttagctatgggtgc |
2349069 |
T |
|
| Q |
118 |
ttctttgtttttgctgttagaaaattttgagagtccaaatagaaataaacataggggaattagagaaattaggagtgcaattgttgtagcgtttattaaa |
217 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2349068 |
ttctttgtttttgctgtgagaaaattttgagagtccaaatagaaataaacataggggaattagagaaattaggagtgcaattgttgtggcgtttattaaa |
2348969 |
T |
|
| Q |
218 |
ctgcttaaatctaaatccattgtagctagatggtgttgtgttttggatgaggttggtggatagaagtagaatt--agttgtattactcttgaatgctagc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2348968 |
ctgcttaaatctaaatccattgtagctagatggtgttgtgttttgtacgaggttggtggatagaagtagaattagagttgtattactcttgaatgctagc |
2348869 |
T |
|
| Q |
316 |
tt |
317 |
Q |
| |
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|| |
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| T |
2348868 |
tt |
2348867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 382 - 595
Target Start/End: Complemental strand, 2348802 - 2348589
Alignment:
| Q |
382 |
tgtttgtggatatgtgtacaaaaaccaataatatatatctccctcacataacgtaaattataattgatcttgaacacgattttaagtgttgttttggaat |
481 |
Q |
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| T |
2348802 |
tgtttgtgaatatgtgtacaaaaaccaataatatatatctccctcacataacgtaaattataattgatcttgaacacgattttaagtgttgttttggaat |
2348703 |
T |
|
| Q |
482 |
ttgaaaattaccacggctaagattatcggattgagttacgattaggtagtcatttttaagacgtttgatgacatcgtttaaagttgtgaaagacaactat |
581 |
Q |
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| T |
2348702 |
ttgaaaattaccacggctaagattatcggattgagttacgattagatagtcatttttaagacgtttgatgacatcgtttaaagttgtgaaagacaactat |
2348603 |
T |
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| Q |
582 |
caaccacatgcccc |
595 |
Q |
| |
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|||||||||||||| |
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| T |
2348602 |
caaccacatgcccc |
2348589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 2305798 - 2305601
Alignment:
| Q |
18 |
atttatcagctaatggacctaaaactctgtggggtggttgtttgccactaaaaattgggaggtgaccaagtattggccatgcacctttagctatgggtgc |
117 |
Q |
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||||||||||||| | |||||| || || ||||||| |||| |||||||||||| || ||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
2305798 |
atttatcagctaaggtacctaagaccctatggggtgattgtgtgccactaaaaagtgagaggtgaccaagtattggccatgcaccttcggctattggtgc |
2305699 |
T |
|
| Q |
118 |
ttctttgtttttgctgttagaaaattttgagagtccaaatagaaataaacataggggaattagagaaat-taggagtgcaattgttgtagcgtttatta |
215 |
Q |
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|||||| ||||||| | | ||||||||||| |||||||||||| ||||||||||||| || ||||| ||||||||||||||||| | |||||||| |
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| T |
2305698 |
ctctttggttttgctatgaacaaattttgagaatccaaatagaaacaaacataggggaa-taatgaaataaaggagtgcaattgttgttgagtttatta |
2305601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 2338119 - 2337960
Alignment:
| Q |
18 |
atttatcagctaatggacctaaaactctgtggggtggttgtttgccactaaaaattgggaggtgaccaagtattggccatgcacctttagctatgggtgc |
117 |
Q |
| |
|
||||||||||||| | |||||| ||||| ||||||| |||| |||||| ||||| || ||| ||||||||||||||||||||||||| ||||| || || |
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| T |
2338119 |
atttatcagctaaggtacctaagactctatggggtgattgtgtgccacgaaaaagtgagagatgaccaagtattggccatgcaccttcggctattggcgc |
2338020 |
T |
|
| Q |
118 |
ttctttgtttttgctgttagaaaattttgagagtccaaatagaaataaacataggggaat |
177 |
Q |
| |
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||||| |||||||| | | || |||||||| ||||||||||| |||||||||||||| |
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| T |
2338019 |
ctctttatttttgctatgaacaacttttgagaatccaaatagaatcaaacataggggaat |
2337960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 464 - 526
Target Start/End: Complemental strand, 2348349 - 2348287
Alignment:
| Q |
464 |
taagtgttgttttggaatttgaaaattaccacggctaagattatcggattgagttacgattag |
526 |
Q |
| |
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||||||||||||| ||| |||||||| |||| | ||||||||||||||||||||||||||| |
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| T |
2348349 |
taagtgttgttttcgaaattgaaaatcaccatcgaaaagattatcggattgagttacgattag |
2348287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 102
Target Start/End: Complemental strand, 2355764 - 2355735
Alignment:
| Q |
73 |
tgggaggtgaccaagtattggccatgcacc |
102 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
2355764 |
tgggaggtgaccaagtattggccatgcacc |
2355735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 34 - 244
Target Start/End: Original strand, 5806191 - 5806395
Alignment:
| Q |
34 |
acctaaaactctgtggggtggttgtttgccactaaaaattgggaggtgaccaagtattggccatgcacctttagctatgggtgcttctttgtttttgctg |
133 |
Q |
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|||||| | ||| ||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| |
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| T |
5806191 |
acctaagattctatggggtgcttgtgtgccacaaaaaattgggaggtgaccaagtattggccatgcacctttggctattggtgcctctttgtttttgcta |
5806290 |
T |
|
| Q |
134 |
ttagaaaattttgagagtccaaatagaaataaacataggggaattagagaaattaggagtgcaattgttgtagcgtttattaaactgcttaaatctaaat |
233 |
Q |
| |
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| || |||||| |||| ||||||||| |||||| | ||| ||| |||||||||||| || || ||| || ||||||| ||| ||| | |||||| |
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| T |
5806291 |
tgagcaaatttagagaatccaaatag------acatagtgaaataagaaaaattaggagtgtaaatggtgtggcatttattaggctgtttagaactaaat |
5806384 |
T |
|
| Q |
234 |
ccattgtagct |
244 |
Q |
| |
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||||| ||||| |
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|
| T |
5806385 |
ccattttagct |
5806395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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