View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4166_low_1 (Length: 814)

Name: NF4166_low_1
Description: NF4166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4166_low_1
NF4166_low_1
[»] chr3 (2 HSPs)
chr3 (388-804)||(9111079-9111497)
chr3 (18-391)||(9111623-9111995)


Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 388 - 804
Target Start/End: Complemental strand, 9111497 - 9111079
Alignment:
Q  388 aatatattattatgacttttaaatatttgaatgaacgaatgttaagatatttattttgatattgagtttcttaacgtttgttctcaattctacaccctcc 487  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9111497 aatatattattatgtcttttaaatatttgaatgaacgaatgttaagatatttattttgatattgagtttcttaacgtttgtcctcaattctacaccctcc 9111398  T
Q  488 atcaagaccttcatcctgcaaacttcatcgtgaccttcatcatgcgacctatatc--cctccattttgtccctcatcttctgcgattttatcaactacga 585  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||  ||||||||| ||||||| ||||||||||||| |||||||||||    
T  9111397 atcaagaccttcatcctgcaaacctcatcgtgactttcatcatgcgacctatatctccctccatttcgtccctcgtcttctgcgatttcatcaactacga 9111298  T
Q  586 cgtgtagactacatcttcaacctttcatctattgagatttcgtccttcctgtttgcggtgctgcaatttcctcgtcaactgctgcgatttcatcaactgc 685  Q
    | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9111297 catgtagactacatcttcaacctttcatctattgagattccgtccttcctgtttgcggtgctgcaatttcctcgtcaactgctgcgatttcatcaattgc 9111198  T
Q  686 aacctgctatttcaatcttcgaaatgccaaacttgaaaattgttggaggtatgttgttaataaatagtttgtgaatgttattatttgaatagtggttgtt 785  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9111197 aacctgctatttcaatcttcgaaatgccaaacttaaaaattgttggaggtatgttgttaagaaatagtttgtgaatgttattatttgaatagtggttgtt 9111098  T
Q  786 gtctaccatcgtccctttg 804  Q
    |||||||||||||||||||    
T  9111097 gtctaccatcgtccctttg 9111079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 391
Target Start/End: Complemental strand, 9111995 - 9111623
Alignment:
Q  18 tgcaagttgtgtatgttgttgaatgcaagatattgagaattgaaagggtatgggaaaatttataagagaagaatcatttgcagaagcacgtgagcataca 117  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9111995 tgcaagttgtgtatgttg---aatgcaagatattgagaattgaaagggtatgggaaaatatataagagaagaatcatttgcagaagcacgtgagcataca 9111899  T
Q  118 gaaaatatggacaggtggagcttgagaaacaataatgccaacattgtacaattgtctcatatatgccgacgttgtatcatatatgccgacatctttttta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9111898 gaaaatatggacaggtggagcttgagaaacaataatgccaacattgtacaattgtctcatatatgccgacgttgtatcatatatgccgacatctttttta 9111799  T
Q  218 agttggtcaaaatatatatgttcttctttcattcaaaatgaggatattgtaagtttaatttttgcatcaaaaacaagtttaatttttatataa--nnnnn 315  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||           
T  9111798 tgttggtcaaaatatatatgttcttctttcattcaaaatgaggatattgtaagtttaatttttacatcaaaaacaagtttaatttttatataattttttt 9111699  T
Q  316 nnnnagatattttctaatttgtgttttaaaggctcgtgttaaaattttaataatagaaattttgcattgacaaata 391  Q
        |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9111698 ttttagatattttctaatttgtgttttaaaggctcgtgttaaaaatttaataatagaaattttgcattgacaaata 9111623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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