View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4166_low_10 (Length: 491)
Name: NF4166_low_10
Description: NF4166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4166_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 36 - 478
Target Start/End: Original strand, 2833167 - 2833603
Alignment:
| Q |
36 |
tgatcatcataattcacactattaacaaaatccattttcatttcccagaaaattgaaatatgataggttaagaaatgttacttttttcactttatattat |
135 |
Q |
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| T |
2833167 |
tgatcatcataattcacactatta-caaaatccattttcatttcccagaaa-------tatgataggttaagaaatgttacttttttcactttatattat |
2833258 |
T |
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| Q |
136 |
aattgaaatctaggagnnnnnnnnctattattaataaaggtagcactaatgacttatttacaactgtctt--aatttaatcagatcaaatttgatcataa |
233 |
Q |
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| T |
2833259 |
aattgaaatctaggagaaaaaaaactattattaataaaggtagcactaatgacttatttacaactgttttttaatttaatcagatcaaatttgatcataa |
2833358 |
T |
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| Q |
234 |
aagattatcaaaaccctcagaacctaacagaaccaatacattagattattcattctgagaaatatgaaagtaaagaaaatgaatatacaaaaattctgag |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2833359 |
aagattatcaaaaccctcagaacctaacagaaccaatacattagattattcattctgagaaatatgaaagtaaagaaaatgaatatacaaaaattctgag |
2833458 |
T |
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| Q |
334 |
atgaacctaccttagtagcattgaattgaagcttaaaaacagctttaatcctattcttctcacttctccattttgaagaacgaaacatcttcacttcaca |
433 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2833459 |
atgaacctaccttagtagcattgaattgaagcttaaaaacagctttaatcctattcttctcacttctccattttgaagaacgaaacatcttcacttcaca |
2833558 |
T |
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| Q |
434 |
tcacaaaactcacgtttcaaataagctcttaatcattttcatctc |
478 |
Q |
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| T |
2833559 |
tcacaaaactcacgtttcaaataagctcttaatcattttcatctc |
2833603 |
T |
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