View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4166_low_12 (Length: 386)
Name: NF4166_low_12
Description: NF4166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4166_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 4 - 369
Target Start/End: Original strand, 51845997 - 51846362
Alignment:
| Q |
4 |
gttgtacaggtgatagaggaacaagtcatgctgaactaaatgggcaaacacgtttaaagatagtgaaaggaattgcacgtggattgacatttctttatac |
103 |
Q |
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| T |
51845997 |
gttgtacaggtgatagaggaacaagtcatgctgaactaaattggccaacacgtttaaagatagtgaaaggaattgcacgtggattgacatttctttatac |
51846096 |
T |
|
| Q |
104 |
tgaattggaatccgaagacctgccacatggaaacctcaaatcaagcaatatacttctagccgataattatgagccactcttaagtgactttgcatttcat |
203 |
Q |
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| T |
51846097 |
tgaatttgaatccgaagacctgccacatggaaacctcaaatcaagcaatatacttctagccgataattatgagccactcttaagtgactttgcatttcat |
51846196 |
T |
|
| Q |
204 |
ccattaatcaactcaagtcatgcaacacaaacaatgtttgcatacaaaactcctgattacgttctttaccaacatgtttcacagaaaaccgatgtttatt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51846197 |
ccattaatcaactcaagtcatgcaacacaaacaatgtttgcatacaaaactcctgattacgttctttaccaacatgtttcacagaaaaccgatgtttatt |
51846296 |
T |
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| Q |
304 |
gtctcggaatcatcattcttgaaatcattacaggaaaattcccttctcaatatcacagtaatggta |
369 |
Q |
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| T |
51846297 |
gtctcggaatcatcattcttgaaatcattacaggaaaattcccttctcaatatcacagtaatggta |
51846362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 129 - 369
Target Start/End: Complemental strand, 18627563 - 18627323
Alignment:
| Q |
129 |
catggaaacctcaaatcaagcaatatacttctagccgataattatgagccactcttaagtgactttgcatttcatccattaatcaactcaagtcatgcaa |
228 |
Q |
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| T |
18627563 |
catggaaacctcaaatcaagcaatgttctactaactgatgattatgagcctcttttaagtgactatgcttttcaaccactaatcaaccctagcattgcag |
18627464 |
T |
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| Q |
229 |
cacaaacaatgtttgcatacaaaactcctgattacgttctttaccaacatgtttcacagaaaaccgatgtttattgtctcggaatcatcattcttgaaat |
328 |
Q |
| |
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||| ||||||||||||||||||| || |||||||||| ||||| | |||| |||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
18627463 |
tgcaatcaatgtttgcatacaaaacaccggattacgttcaaaaccaaaagctttcgcagaaagccgatgtttattgtctcggaatcatcattcttgaact |
18627364 |
T |
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| Q |
329 |
cattacaggaaaattcccttctcaatatcacagtaatggta |
369 |
Q |
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| T |
18627363 |
cattacaggaaaattcccttctcagtatcatagtaacggta |
18627323 |
T |
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