View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4166_low_13 (Length: 376)
Name: NF4166_low_13
Description: NF4166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4166_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 186 - 360
Target Start/End: Original strand, 7296588 - 7296762
Alignment:
| Q |
186 |
agattattatacttagatactttagtgtcgttttcaaacacatcttgtgcaggttttgacactttaccagtttaatatattttactttgattacaagttt |
285 |
Q |
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| T |
7296588 |
agattattatacttagatactttaatgtcgttttcaaacacgtcttgtgcaggttttgacactttaccagtttaatatattttactttgattacaagttt |
7296687 |
T |
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| Q |
286 |
ttatacgacactaataacaaataaaaatcagtgagcttaaatatcagattaattaacaaataaaaactctcacat |
360 |
Q |
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| T |
7296688 |
ttatacgacactaataacaaataaaaatcagtgagcttaaatatcagattaattaacaaataaaaactctcacat |
7296762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 7296419 - 7296549
Alignment:
| Q |
16 |
atcatacaacattttgacaaagtaaaactattaaccttttcatggatgaaagggaataatacggttttgttttttgaatgtgaactttggtggcataatc |
115 |
Q |
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| T |
7296419 |
atcatgcaactttttgacaaagtaaaactattaaccttttcatggatgaaagggaataatacggttttgttttctgaatgtgaactttggtggcataatc |
7296518 |
T |
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| Q |
116 |
caattatttgtatgagttatgtcacataatc |
146 |
Q |
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| T |
7296519 |
caattatttgtatgagttatgttacataatc |
7296549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 266
Target Start/End: Complemental strand, 12782005 - 12781931
Alignment:
| Q |
192 |
ttatacttagatactttagtgtcgttttcaaacacatcttgtgcaggttttgacactttaccagtttaatatatt |
266 |
Q |
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| T |
12782005 |
ttatactttgatactttagtgtcattttcaagcgcaccttgtgctagtttcgacacttttcaagtttaatatatt |
12781931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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