View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4166_low_16 (Length: 341)

Name: NF4166_low_16
Description: NF4166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4166_low_16
NF4166_low_16
[»] chr1 (2 HSPs)
chr1 (14-333)||(21253101-21253420)
chr1 (25-116)||(21270651-21270742)
[»] chr5 (2 HSPs)
chr5 (117-330)||(39580579-39580789)
chr5 (118-180)||(18582715-18582774)
[»] chr6 (2 HSPs)
chr6 (118-330)||(9160787-9160996)
chr6 (118-180)||(12924990-12925049)
[»] chr4 (4 HSPs)
chr4 (118-330)||(19207876-19208086)
chr4 (118-180)||(5738283-5738342)
chr4 (118-180)||(13655585-13655644)
chr4 (118-180)||(13670226-13670285)
[»] scaffold0051 (1 HSPs)
scaffold0051 (118-330)||(40041-40251)
[»] chr3 (2 HSPs)
chr3 (116-292)||(48261106-48261275)
chr3 (118-180)||(18662065-18662124)
[»] chr2 (4 HSPs)
chr2 (114-330)||(24211386-24211580)
chr2 (118-330)||(24213720-24213910)
chr2 (118-180)||(27564688-27564747)
chr2 (118-180)||(37462405-37462464)
[»] chr8 (1 HSPs)
chr8 (163-232)||(33015647-33015716)
[»] scaffold0014 (1 HSPs)
scaffold0014 (118-180)||(23724-23783)
[»] chr7 (2 HSPs)
chr7 (118-180)||(1833980-1834039)
chr7 (249-308)||(24157400-24157459)


Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 14 - 333
Target Start/End: Complemental strand, 21253420 - 21253101
Alignment:
Q  14 actaactgctcgagtatttccgctttgcttggagaagcatgatccaaagtaacctcctctggttgttcggcccataatcattgagcacgatggttttctg 113  Q
    ||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  21253420 actaactacttgattatttccgctttgcttggagaagcatgatccaaagtaacctcctctggttgttcggcccataatcgttgagcaagatggttttctg 21253321  T
Q  114 caattgatagagcagagccaataaaataacagaataaatcaatagaaactagaaaatagtggtgaatcttattaagtagatggaataaagaaaatagtta 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21253320 caattgatagagcagagccaataaaataacagaataaatcaatagaaactagaaaatagtggtgaatcttattaagtagatggaataaagaaaagagtta 21253221  T
Q  214 caagttcgagagcaaagctactcagcaaagtctcgtgctgccggccctaaaagggtactaacaaataatctgattgcttgtctagaactccctctacaga 313  Q
    ||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21253220 caagttcgagagcaaagctcctcagcaacttctcgtgctgccggccctaaaagggtactaacaaataatctgattgcttgtctagaactccctctacaga 21253121  T
Q  314 tttacttatatagaataata 333  Q
    ||||||||||||||| ||||    
T  21253120 tttacttatatagaagaata 21253101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 25 - 116
Target Start/End: Complemental strand, 21270742 - 21270651
Alignment:
Q  25 gagtatttccgctttgcttggagaagcatgatccaaagtaacctcctctggttgttcggcccataatcattgagcacgatggttttctgcaa 116  Q
    |||||||||| |||||||| |||||||||||||||| ||||||||||||  ||||| ||||||||||  |||| || |||||||||||||||    
T  21270742 gagtatttcccctttgcttagagaagcatgatccaaggtaacctcctcttattgtttggcccataattgttgaacaggatggttttctgcaa 21270651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 117 - 330
Target Start/End: Original strand, 39580579 - 39580789
Alignment:
Q  117 ttgatagagcagagccaataaaataacagaataaatcaatagaaactagaaaatagtggtgaatcttattaagtagatggaataaagaaaatagttacaa 216  Q
    ||||||||||||||||||||| | |   ||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  39580579 ttgatagagcagagccaataacaaa---gaagaaatcaatagaaactagagaatagtggtgaatattattaagtagatggaataaagaaaagagttacaa 39580675  T
Q  217 gttcgagagcaaagctactcagcaaagtctcgtgctgccggccctaaaagggtactaacaaataatctgattgcttgtctagaactccctctacagattt 316  Q
    |||| ||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||  ||||||||||||||||||||||    
T  39580676 gttccagagcaaagctcctcagcaaagtctcttgctgccggccctaaaaggctactaacaaataatctaattgcttacctagaactccctctacagattt 39580775  T
Q  317 acttatatagaata 330  Q
    ||||||||||||||    
T  39580776 acttatatagaata 39580789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 18582715 - 18582774
Alignment:
Q  118 tgatagagcagagccaataaaataacagaataaatcaatagaaactagaaaatagtggtgaat 180  Q
    |||||||||||||| |||||||   |||||||||||||||||||| ||| ||| |||||||||    
T  18582715 tgatagagcagagctaataaaa---cagaataaatcaatagaaacaagagaatggtggtgaat 18582774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 118 - 330
Target Start/End: Original strand, 9160787 - 9160996
Alignment:
Q  118 tgatagagcagagccaataaaataacagaataaatcaatagaaactagaaaatagtggtgaatcttattaagtagatggaataaagaaaatagttacaag 217  Q
    |||||||||||||||||||| | || ||||   |||||||||||||| |  |||| ||||||| |||||||||||||||||||||||||| |||||||||    
T  9160787 tgatagagcagagccaataacacaaaagaa---atcaatagaaactaaagcatagaggtgaatattattaagtagatggaataaagaaaagagttacaag 9160883  T
Q  218 ttcgagagcaaagctactcagcaaagtctcgtgctgccggccctaaaagggtactaacaaataatctgattgcttgtctagaactccctctacagattta 317  Q
    ||| ||||||||||| || ||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||    
T  9160884 ttccagagcaaagctcctgagcaaagtctcttgctgccggccctaaaaggctactaacaaataatctaattgcttgtctagaactccctctacatattta 9160983  T
Q  318 cttatatagaata 330  Q
    ||||||| |||||    
T  9160984 cttatattgaata 9160996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 12924990 - 12925049
Alignment:
Q  118 tgatagagcagagccaataaaataacagaataaatcaatagaaactagaaaatagtggtgaat 180  Q
    |||||| ||||||| |||||||   |||||||||||||||||||| ||| |||||||||||||    
T  12924990 tgatagggcagagctaataaaa---cagaataaatcaatagaaacaagagaatagtggtgaat 12925049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 6e-59; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 118 - 330
Target Start/End: Complemental strand, 19208086 - 19207876
Alignment:
Q  118 tgatagagcagagccaataaaataacagaataaatcaatagaaactagaaaatagtggtgaatcttattaagtagatggaataaagaaaatagttacaag 217  Q
    |||||||||||||||||||| |   ||||| |||||||||||||||||| |||| | |||||| |||||||||||||| ||||||||||| |||||||||    
T  19208086 tgatagagcagagccaataaca---cagaagaaatcaatagaaactagagaataatagtgaatattattaagtagatgaaataaagaaaagagttacaag 19207990  T
Q  218 ttcgagagcaaagc-tactcagcaaagtctcgtgctgccggccctaaaagggtactaacaaataatctgattgcttgtctagaactccctctacagattt 316  Q
    ||| |||||||||| | ||||| |||||||| |||||||| |||||||||| |||||||||||||||| |||||||  ||||||||||||||||| | ||    
T  19207989 ttccagagcaaagcctcctcagtaaagtctcttgctgccgaccctaaaaggctactaacaaataatctaattgcttacctagaactccctctacacactt 19207890  T
Q  317 acttatatagaata 330  Q
    ||||||||||||||    
T  19207889 acttatatagaata 19207876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 5738342 - 5738283
Alignment:
Q  118 tgatagagcagagccaataaaataacagaataaatcaatagaaactagaaaatagtggtgaat 180  Q
    |||||||||||||| |||||||   |||||||||||||||||||| ||| |||||||||||||    
T  5738342 tgatagagcagagctaataaaa---cagaataaatcaatagaaacaagagaatagtggtgaat 5738283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 13655644 - 13655585
Alignment:
Q  118 tgatagagcagagccaataaaataacagaataaatcaatagaaactagaaaatagtggtgaat 180  Q
    |||||||||||||| |||||||   |||||||||||||||||||| ||| |||||||||||||    
T  13655644 tgatagagcagagctaataaaa---cagaataaatcaatagaaacaagagaatagtggtgaat 13655585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 13670285 - 13670226
Alignment:
Q  118 tgatagagcagagccaataaaataacagaataaatcaatagaaactagaaaatagtggtgaat 180  Q
    ||||||| |||||| |||||||   |||||||||||||||||||| ||| ||| |||||||||    
T  13670285 tgatagaacagagctaataaaa---cagaataaatcaatagaaacaagagaatggtggtgaat 13670226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 118 - 330
Target Start/End: Complemental strand, 40251 - 40041
Alignment:
Q  118 tgatagagcagagccaataaaataacagaataaatcaatagaaactagaaaatagtggtgaatcttatta---agtagatggaataaagaaaatagttac 214  Q
    |||||||||||||||||||| | |   ||| |||||||||||||||||| ||||||||||||| ||||||   ||||||||||||| | |||| ||||||    
T  40251 tgatagagcagagccaataacaaa---gaagaaatcaatagaaactagagaatagtggtgaatattattattaagtagatggaatataaaaaagagttac 40155  T
Q  215 aagttcgagagcaaagctactcagcaaagtctcgtgctgccggccctaaaagggtactaacaaataatctgattgcttgtctagaactccctctacagat 314  Q
     ||||| ||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||     
T  40154 tagttccagagcaa-gctcctcagcaaagtctcttgctgccggccctaaaagggtactaacaaataatatgattgctt-actagaactccctctacagac 40057  T
Q  315 ttacttatatagaata 330  Q
    ||||||||||||||||    
T  40056 ttacttatatagaata 40041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 116 - 292
Target Start/End: Original strand, 48261106 - 48261275
Alignment:
Q  116 attgatagagcagagccaataaaataacagaataaatcaatagaaactagaaaatagtggtgaatcttattaagtagatggaataaagaaaatagttaca 215  Q
    ||||||||||||||||||||||||   ||||||||| |||||||||||||| |||||||||||||   |||||||||||||||||||||||| |||||||    
T  48261106 attgatagagcagagccaataaaa---cagaataaa-caatagaaactagagaatagtggtgaat---attaagtagatggaataaagaaaagagttaca 48261198  T
Q  216 agttcgagagcaaagctactcagcaaagtctcgtgctgccggccctaaaagggtactaacaaataatctgattgctt 292  Q
    ||||| || |||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||    
T  48261199 agttccagtgcaaagctcctcagcaaagtctcttgctgccggccctaaaaggatactaacaaataatctaattgctt 48261275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 118 - 180
Target Start/End: Complemental strand, 18662124 - 18662065
Alignment:
Q  118 tgatagagcagagccaataaaataacagaataaatcaatagaaactagaaaatagtggtgaat 180  Q
    |||||||||||||| |||||||   |||||||||||||||||||| ||| |||||||||||||    
T  18662124 tgatagagcagagctaataaaa---cagaataaatcaatagaaacaagagaatagtggtgaat 18662065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 114 - 330
Target Start/End: Complemental strand, 24211580 - 24211386
Alignment:
Q  114 caattgatagagcagagccaataaaataacagaataaatcaatagaaactagaaaatagtggtgaatcttattaagtagatggaataaagaaaatagtta 213  Q
    |||||||||||||||||||||||| | |   ||| ||||||||| |||| ||| ||||||||||||| |||||||||||||||||||||||||| |||||    
T  24211580 caattgatagagcagagccaataacaaa---gaagaaatcaatataaacaagagaatagtggtgaatattattaagtagatggaataaagaaaagagtta 24211484  T
Q  214 caagttcgagagcaaagctactcagcaaagtctcgtgctgccggccctaaaagggtactaacaaataatctgattgcttgtctagaactccctctacaga 313  Q
    ||||||| ||||||||||                   |||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||    
T  24211483 caagttccagagcaaagc-------------------ctgccggccctaaaagggtactaacaaataatatgattgcttacctagaactccctctacaga 24211403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 118 - 330
Target Start/End: Complemental strand, 24213910 - 24213720
Alignment:
Q  118 tgatagagcagagccaataaaataacagaataaatcaatagaaactagaaaatagtggtgaatcttattaagtagatggaataaagaaaatagttacaag 217  Q
    |||||||||||||||||||| | |   ||| ||||||||| |||| ||| ||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  24213910 tgatagagcagagccaataacaaa---gaagaaatcaatataaacaagagaatagtggtgaatattattaagtagatggaataaagaaaagagttacaag 24213814  T
Q  218 ttcgagagcaaagctactcagcaaagtctcgtgctgccggccctaaaagggtactaacaaataatctgattgcttgtctagaactccctctacagattta 317  Q
    ||| ||||||||||                   |||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||| |||    
T  24213813 ttccagagcaaagc-------------------ctgccggccctaaaagggtactaacaaataatatgattgcttacctagaactccctctacagactta 24213733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 27564688 - 27564747
Alignment:
Q  118 tgatagagcagagccaataaaataacagaataaatcaatagaaactagaaaatagtggtgaat 180  Q
    |||||||||||||| |||||||   |||||||||||||||||||| ||| |||||||||||||    
T  27564688 tgatagagcagagctaataaaa---cagaataaatcaatagaaacaagagaatagtggtgaat 27564747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 37462405 - 37462464
Alignment:
Q  118 tgatagagcagagccaataaaataacagaataaatcaatagaaactagaaaatagtggtgaat 180  Q
    |||||||||||||| |||||||   |||||||||||||||||||| ||| |||||||||||||    
T  37462405 tgatagagcagagctaataaaa---cagaataaatcaatagaaacaagagaatagtggtgaat 37462464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 163 - 232
Target Start/End: Complemental strand, 33015716 - 33015647
Alignment:
Q  163 tagaaaatagtggtgaatcttattaagtagatggaataaagaaaatagttacaagttcgagagcaaagct 232  Q
    |||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  33015716 tagagaatagtggtgaatattattaagtagatggaataaagaaaagagttacaagttccagagcaaagct 33015647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 23724 - 23783
Alignment:
Q  118 tgatagagcagagccaataaaataacagaataaatcaatagaaactagaaaatagtggtgaat 180  Q
    |||||||||||||| |||||||   |||||||||||||||||||| ||| |||||||||||||    
T  23724 tgatagagcagagctaataaaa---cagaataaatcaatagaaacaagagaatagtggtgaat 23783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 1833980 - 1834039
Alignment:
Q  118 tgatagagcagagccaataaaataacagaataaatcaatagaaactagaaaatagtggtgaat 180  Q
    |||||||||||||| |||||||||   |||||||||||||||||| ||| |||||||||||||    
T  1833980 tgatagagcagagctaataaaata---gaataaatcaatagaaacaagagaatagtggtgaat 1834039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 24157459 - 24157400
Alignment:
Q  249 tgctgccggccctaaaagggtactaacaaataatctgattgcttgtctagaactccctct 308  Q
    ||||| ||||| |||| || |||||||||||||||| |||||||  ||||||||||||||    
T  24157459 tgctgtcggccataaacggctactaacaaataatctaattgcttacctagaactccctct 24157400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University