View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4166_low_19 (Length: 303)

Name: NF4166_low_19
Description: NF4166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4166_low_19
NF4166_low_19
[»] chr2 (11 HSPs)
chr2 (75-293)||(32534471-32534688)
chr2 (75-278)||(32111879-32112082)
chr2 (80-278)||(32119922-32120120)
chr2 (97-278)||(32205096-32205274)
chr2 (121-278)||(32175565-32175722)
chr2 (97-278)||(32159285-32159463)
chr2 (75-272)||(32178706-32178900)
chr2 (18-82)||(32534714-32534778)
chr2 (75-177)||(32183672-32183771)
chr2 (129-278)||(32210857-32210995)
chr2 (189-278)||(32183586-32183675)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 75 - 293
Target Start/End: Complemental strand, 32534688 - 32534471
Alignment:
Q  75 tctgatcttcatcaacgacaatgatctcaacaatgtttgatagcatcaagccacttttatctgcagtggcctcaattgtgctaatgtgaaccatcacgaa 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  32534688 tctgatcttcatcaacgacaatgatctcaacaatgtttgatagcatcaagccacttttatctgcagtagcctcaattgtgctaatgtaaaccatcacgaa 32534589  T
Q  175 tgaactcattccccatgagctcctaaactttgttcaatcgggacttcaccatctttgtcgctaattctcagcgcaattcaccatagtcgttgaagaattt 274  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32534588 tgaactcattccccatgagctcctaaactttgttcaatc-ggacttcaccatctttgtcgctaattctcagcgcaattcaccatagtcgttgaagaattt 32534490  T
Q  275 caagatgcttttccctttg 293  Q
    |||||||||||||||||||    
T  32534489 caagatgcttttccctttg 32534471  T

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Target: chr2; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 75 - 278
Target Start/End: Complemental strand, 32112082 - 32111879
Alignment:
Q  75 tctgatcttcatcaacgacaatgatctcaacaatgtttgatagcatcaagccacttttatctgcagtggcctcaattgtgctaatgtgaaccatcacgaa 174  Q
    ||||||||||||||| |||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||| ||||  |||||||    
T  32112082 tctgatcttcatcaatgacagtgatctcaacaatgtttgatagcagcaagccagttttatctgcagtggcctcaattgcgctaatgcgaactgtcacgaa 32111983  T
Q  175 tgaactcattccccatgagctcctaaactttgttcaatcgggacttcaccatctttgtcgctaattctcagcgcaattcaccatagtcgttgaagaattt 274  Q
    |||||||||||| | |||  |||||||||||||||||||||||||||||||| ||| |||| |||||   || ||||||||||||||| |||||||||||    
T  32111982 tgaactcattcctcgtgaagtcctaaactttgttcaatcgggacttcaccatgtttttcgccaattcaacgcacaattcaccatagtcattgaagaattt 32111883  T
Q  275 caag 278  Q
    ||||    
T  32111882 caag 32111879  T

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Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 80 - 278
Target Start/End: Complemental strand, 32120120 - 32119922
Alignment:
Q  80 tcttcatcaacgacaatgatctcaacaatgtttgatagcatcaagccacttttatctgcagtggcctcaattgtgctaatgtgaaccatcacgaatgaac 179  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||  |||  || |||||||||    
T  32120120 tcttcatcaacgacaatgatctcaacaatgtttgatagcagcaagccagttttatctgcagtggcctcaattatgctaatgcaaacggtcgcgaatgaac 32120021  T
Q  180 tcattccccatgagctcctaaactttgttcaatcgggacttcaccatctttgtcgctaattctcagcgcaattcaccatagtcgttgaagaatttcaag 278  Q
    ||||||| | ||| |||||||||||||||||||||||||||  |||||||| | || ||| | |  | | ||||||| |||||||||||||||||||||    
T  32120020 tcattcctcgtgaactcctaaactttgttcaatcgggacttagccatcttttttgccaatcccccacacgattcaccgtagtcgttgaagaatttcaag 32119922  T

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Target: chr2; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 97 - 278
Target Start/End: Original strand, 32205096 - 32205274
Alignment:
Q  97 gatctcaacaatgtttgatagcatcaagccacttttatctgcagtggcctcaattgtgctaatgtgaaccatcacgaatgaactcattccccatgagctc 196  Q
    |||| ||||||||||||||||||   || |||||||||| ||| ||||||| ||||||||| || ||| |||||| |||||| ||||||| |||||  ||    
T  32205096 gatcgcaacaatgtttgatagca---agacacttttatcggcaatggcctctattgtgctagtgcgaaacatcacaaatgaagtcattcctcatgaaatc 32205192  T
Q  197 ctaaactttgttcaatcgggacttcaccatctttgtcgctaattctcagcgcaattcaccatagtcgttgaagaatttcaag 278  Q
    ||||||||||| |||||||||||||||||| |||||||| |||||||||||||||| ||||||||  |||||||||||||||    
T  32205193 ctaaactttgtacaatcgggacttcaccatttttgtcgccaattctcagcgcaatttaccatagttattgaagaatttcaag 32205274  T

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Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 121 - 278
Target Start/End: Complemental strand, 32175722 - 32175565
Alignment:
Q  121 caagccacttttatctgcagtggcctcaattgtgctaatgtgaaccatcacgaatgaactcattccccatgagctcctaaactttgttcaatcgggactt 220  Q
    |||||||||| | |||||| |||||||||||||||||||| |||||||||| ||||| || ||||| |||||||||||| || || ||||| | ||||||    
T  32175722 caagccacttgtgtctgcaatggcctcaattgtgctaatgcgaaccatcacaaatgagcttattcctcatgagctcctacacatttttcaagctggactt 32175623  T
Q  221 caccatctttgtcgctaattctcagcgcaattcaccatagtcgttgaagaatttcaag 278  Q
    |||||||||| |||| ||| ||| || |||||||||||| || |||||||||||||||    
T  32175622 caccatctttttcgccaatcctccgcacaattcaccataatcattgaagaatttcaag 32175565  T

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Target: chr2; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 97 - 278
Target Start/End: Complemental strand, 32159463 - 32159285
Alignment:
Q  97 gatctcaacaatgtttgatagcatcaagccacttttatctgcagtggcctcaattgtgctaatgtgaaccatcacgaatgaactcattccccatgagctc 196  Q
    ||||||||||||||| |||| ||   |||||||| | |||||| |||||||||||||| | ||| |||||||||||||||| |||||||| |||||||||    
T  32159463 gatctcaacaatgttcgatacca---agccacttgtgtctgcaatggcctcaattgtgttcatgcgaaccatcacgaatgagctcattcctcatgagctc 32159367  T
Q  197 ctaaactttgttcaatcgggacttcaccatctttgtcgctaattctcagcgcaattcaccatagtcgttgaagaatttcaag 278  Q
    ||| | ||| ||||| | ||| |||||||||||| |||| ||| ||| || |||||||||||| || |||||||||||||||    
T  32159366 ctacaattttttcaagctggaattcaccatctttttcgccaatcctccgcacaattcaccatactcattgaagaatttcaag 32159285  T

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Target: chr2; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 75 - 272
Target Start/End: Complemental strand, 32178900 - 32178706
Alignment:
Q  75 tctgatcttcatcaacgacaatgatctcaacaatgtttgatagcatcaagccacttttatctgcagtggcctcaattgtgctaatgtgaaccatcacgaa 174  Q
    ||||||||||||||||||    ||||||||||||||| ||||  |   |||||||| | |||||| ||||||||||||| |||||  ||||||||| |||    
T  32178900 tctgatcttcatcaacgatcgagatctcaacaatgttcgatacga---agccacttgtgtctgcaatggcctcaattgtactaatacgaaccatcatgaa 32178804  T
Q  175 tgaactcattccccatgagctcctaaactttgttcaatcgggacttcaccatctttgtcgctaattctcagcgcaattcaccatagtcgttgaagaat 272  Q
    ||| |||||||| |||||||||||| ||||| ||||| | |||||| | ||||||| |||| ||| ||| |||||||||||||||||| |||||||||    
T  32178803 tgagctcattcctcatgagctcctacacttttttcaagctggacttgatcatctttttcgccaatcctccgcgcaattcaccatagtcattgaagaat 32178706  T

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Target: chr2; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 32534778 - 32534714
Alignment:
Q  18 ctttctataggatttgaattgacggcgttaaataatttttccggtccatagcagtcatctgatct 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32534778 ctttctataggatttgaattgacggcgttaaataatttttccggtccatagcagtcatctgatct 32534714  T

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Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 177
Target Start/End: Complemental strand, 32183771 - 32183672
Alignment:
Q  75 tctgatcttcatcaacgacaatgatctcaacaatgtttgatagcatcaagccacttttatctgcagtggcctcaattgtgctaatgtgaaccatcacgaa 174  Q
    ||||||||||||||| ||    ||||||||||||||| |||| ||   |||||||| | |||||| ||||||||||| |||||||| |||||||||||||    
T  32183771 tctgatcttcatcaatgatcgagatctcaacaatgttcgatacca---agccacttgtgtctgcaatggcctcaattatgctaatgcgaaccatcacgaa 32183675  T

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Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 278
Target Start/End: Original strand, 32210857 - 32210995
Alignment:
Q  129 ttttatctgcagtggcctcaattgtgctaatgtgaaccatcacgaatgaactcattccccatgagctcctaaactttgttcaatcgggacttcaccatct 228  Q
    ||||||| ||| ||||||| ||||||||| || ||| ||||||||| ||| || |||| |||||| ||||||||||||| ||           ||||| |    
T  32210857 ttttatcggcaatggcctctattgtgctagtgcgaaacatcacgaaagaagtcgttcctcatgagatcctaaactttgtaca-----------accatgt 32210945  T
Q  229 ttgtcgctaattctcagcgcaattcaccatagtcgttgaagaatttcaag 278  Q
    || || | |||||||||||||||| ||||||||| |||||||||||||||    
T  32210946 ttttcaccaattctcagcgcaatttaccatagtcattgaagaatttcaag 32210995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 278
Target Start/End: Complemental strand, 32183675 - 32183586
Alignment:
Q  189 atgagctcctaaactttgttcaatcgggacttcaccatctttgtcgctaattctcagcgcaattcaccatagtcgttgaagaatttcaag 278  Q
    ||||||||||| | ||| ||||| | |||||||||||||||| |||| ||| ||| || || ||||||||| || |||||||||||||||    
T  32183675 atgagctcctacaattttttcaagctggacttcaccatctttttcgccaatcctccgcacagttcaccataatcattgaagaatttcaag 32183586  T

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