View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4166_low_2 (Length: 798)
Name: NF4166_low_2
Description: NF4166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4166_low_2 |
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| [»] scaffold0037 (5 HSPs) |
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Alignment Details
Target: scaffold0037 (Bit Score: 88; Significance: 7e-42; HSPs: 5)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 79 - 190
Target Start/End: Complemental strand, 104787 - 104676
Alignment:
| Q |
79 |
tacaaaagcagcaaagcaacacaaagaagagatgttttaacaaaagaaaaaatgcaacagttgtcaatgtcacgcaagatgttggaacataaatttacca |
178 |
Q |
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| T |
104787 |
tacaaaagcagcaaagcaacacaaagacaagatgttttaacaaaagcaaaaatgcaacagttgtcaatgacacgcaagatgttgggacataaatttacca |
104688 |
T |
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| Q |
179 |
gtttcttaattt |
190 |
Q |
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| T |
104687 |
gtttcctaattt |
104676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 338 - 396
Target Start/End: Complemental strand, 104220 - 104162
Alignment:
| Q |
338 |
tcaagagtctgctaaaatcctaacatattcactgctaaaatccaaatacattatccctt |
396 |
Q |
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| T |
104220 |
tcaagagtctgctaaaatcctaacatatttactgctaaaatccttatacattatccctt |
104162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 190
Target Start/End: Original strand, 30236 - 30323
Alignment:
| Q |
103 |
agaagagatgttttaacaaaagaaaaaatgcaacagttgtcaatgtcacgcaagatgttggaacataaatttaccagtttcttaattt |
190 |
Q |
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| T |
30236 |
agaaaagatgttttaaccaaagcaaaaatgcaacacttatcaatgacacgcaatatgttcggacataaatttgcaagtttcttaattt |
30323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 30964 - 31007
Alignment:
| Q |
186 |
aatttctatgatatactcctgtatgattgttgtaataaaagtga |
229 |
Q |
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| T |
30964 |
aatttctatgatatactcgtgtatgattcttgtaataaaagtga |
31007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Original strand, 31254 - 31291
Alignment:
| Q |
333 |
acaattcaagagtctgctaaaatcctaacatattcact |
370 |
Q |
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| T |
31254 |
acaaatcaagagtctgctaaaatcctaacatattcact |
31291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 14200444 - 14200380
Alignment:
| Q |
1 |
tccaagtctaagttaagtattcagaagaaaggtgttgcaaacttcccgacctttt-acttgaaga |
64 |
Q |
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| T |
14200444 |
tccaagtctcagttaagtattcacgagaaaggtgttgcaaacttcccgaccttttcacttgaaga |
14200380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 338 - 396
Target Start/End: Complemental strand, 14199895 - 14199837
Alignment:
| Q |
338 |
tcaagagtctgctaaaatcctaacatattcactgctaaaatccaaatacattatccctt |
396 |
Q |
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| T |
14199895 |
tcaagagtctactaaaattctaacatattcacggctaaaatcctaatacattatccctt |
14199837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 14200238 - 14200172
Alignment:
| Q |
79 |
tacaaaagcagcaaagcaacacaaagaagagatgttttaacaaaagaaaaaatgcaacagttgtcaa |
145 |
Q |
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| T |
14200238 |
tacaaaagcagcaaagccacacaaagaaaatatgttttaacaaaagcaaaaatgaaaccgttgtcaa |
14200172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 288 - 331
Target Start/End: Complemental strand, 14200170 - 14200127
Alignment:
| Q |
288 |
gacactaatattgttagatattgacagagtttctaaattaatct |
331 |
Q |
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| T |
14200170 |
gacactcatattgttagatatttacagagtttctaaattaatct |
14200127 |
T |
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