View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4166_low_25 (Length: 259)
Name: NF4166_low_25
Description: NF4166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4166_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 3789421 - 3789662
Alignment:
| Q |
1 |
atgtatagtttaccttattgtcattactaggacggacaacccacagaaaaggcttgtcaagaagatcaagtcctagggctagttcattaaattggttttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3789421 |
atgtatagtttaccttattgtcattactaggacgaacaacccaaagaaaaggcttgtcaagaagatcaagtcctagggctagttcattaaattggttttg |
3789520 |
T |
|
| Q |
101 |
gtccattactaccaagctaccaaaggaaacatatatgactgattgaggtgcttgtttatctaaccaatctaagcaagttgagtcttctttccataatgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
3789521 |
gtccattactaccaagctaccaaaggaaacatatatgactgattgaggtgcttgtttatctaaccattctaagcaagttgagtcttcttgccataatgaa |
3789620 |
T |
|
| Q |
201 |
cttttgttgttgttactttccatcaatggaccaattggtagg |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
3789621 |
cttttgttgttgttactttccatcaatggaccaattggtagg |
3789662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 3800686 - 3800445
Alignment:
| Q |
1 |
atgtatagtttaccttattgtcattactaggacggacaacccacagaaaaggcttgtcaagaagatcaagtcctagggctagttcattaaattggttttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3800686 |
atgtatagtttaccttattgtcattactaggacgaacaacccaaagaaaaggcttgtcaagaagatcaagtcctagggctagttcattaaattggttttg |
3800587 |
T |
|
| Q |
101 |
gtccattactaccaagctaccaaaggaaacatatatgactgattgaggtgcttgtttatctaaccaatctaagcaagttgagtcttctttccataatgaa |
200 |
Q |
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| T |
3800586 |
gtccattactaccaagctaccaaaggaaacatatatgacagattgaggtgcttgtttatctaaccaatctaagcaagttgagtcttcttgccataatgaa |
3800487 |
T |
|
| Q |
201 |
cttttgttgttgttactttccatcaatggaccaattggtagg |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
3800486 |
cttttgttgttgttactttccatcaatggaccaattggtagg |
3800445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 5 - 242
Target Start/End: Original strand, 3768089 - 3768326
Alignment:
| Q |
5 |
atagtttaccttattgtcattactaggacggacaacccacagaaaaggcttgtcaagaagatcaagtcctagggctagttcattaaattggttttggtcc |
104 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3768089 |
atagtttaccttgttgtcattactaggacgaacaacccaaagaaaaggcttgtcaagaagatcaagtcctagggctagttcattaaattggttttggtcc |
3768188 |
T |
|
| Q |
105 |
attactaccaagctaccaaaggaaacatatatgactgattgaggtgcttgtttatctaaccaatctaagcaagttgagtcttctttccataatgaacttt |
204 |
Q |
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|||||| |||| ||||| ||||||||||||| ||| ||||| | || ||| ||||||| |||||||||| |||| |||||||| ||| |||||||||| |
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| T |
3768189 |
attactgccaaactaccgaaggaaacatatacgaccgattgtgatggttgcttatctagccaatctaaggaagtcatgtcttcttgccagaatgaacttt |
3768288 |
T |
|
| Q |
205 |
tgttgttgttactttccatcaatggaccaattggtagg |
242 |
Q |
| |
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||||| | | | ||||||||||||| |||||||||||| |
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| T |
3768289 |
tgttgctatcattttccatcaatgggccaattggtagg |
3768326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 210
Target Start/End: Original strand, 3780367 - 3780572
Alignment:
| Q |
5 |
atagtttaccttattgtcattactaggacggacaacccacagaaaaggcttgtcaagaagatcaagtcctagggctagttcattaaattggttttggtcc |
104 |
Q |
| |
|
||||||||||||||| ||||| || ||||| |||||||| | |||||| || ||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
3780367 |
atagtttaccttattatcattgctcggacgaacaacccaaataaaaggtttatcaagaagatcaagtcctaaagctagttcgttaaattggttttggtcc |
3780466 |
T |
|
| Q |
105 |
attactaccaagctaccaaaggaaacatatatgactgattgaggtgcttgtttatctaaccaatctaagcaagttgagtcttctttccataatgaacttt |
204 |
Q |
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||||| |||| |||||||||||||||||| ||| |||||||||| | || ||| | ||||||||| || |||| |||||||| ||| ||||||||| |
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| T |
3780467 |
attacggccaaactaccaaaggaaacatatgcgacggattgaggtggatattgatcgagccaatctaaacatgttgcgtcttcttgccagaatgaacttg |
3780566 |
T |
|
| Q |
205 |
tgttgt |
210 |
Q |
| |
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|||||| |
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|
| T |
3780567 |
tgttgt |
3780572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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